Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq9081 255 6e-63 seq27324 82.4 8e-11 >seq9081 Length=2203 Score = 255 bits (282), Expect = 6e-63 Identities = 590/884 (67%), Gaps = 22/884 (2%) Strand=Plus/Plus Query 21138 CATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCAC 21197 |||| |||| |||||| | ||| | | ||||| | ||| | |||||||| || | Sbjct 1 CATCCAATGTGAAAACTTGATCCTGACGACTCGACATGACTCCACTCTTTTGATATTCGC 60 Query 21198 TAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAA 21257 ||| || ||| || || || ||||| || || | ||| || |||||||||| | Sbjct 61 CAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATAAATGAGA 120 Query 21258 ATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTA 21317 ||||||||| | ||| | | || | | |||| ||| |||||| ||| |||| Sbjct 121 ATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATGATCGGCTA 180 Query 21318 CAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAG 21377 | ||||| || |||| | ||||||| ||||||||||| || | || ||||| ||||| | Sbjct 181 CGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTG 240 Query 21378 CTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAG 21437 | | |||||||| ||||| || || || || || || | | | || | Sbjct 241 CGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCAACAA--CTCG 298 Query 21438 ATGTACTAGGGGGATAC--AATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCA 21494 | | | || || | | ||||| ||||| |||| || |||||||| |||| ||| | Sbjct 299 TTCTTTT-GGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAA 357 Query 21495 AACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCT 21554 ||||| || || || | |||||| || ||||| ||||| ||||||||||| | || Sbjct 358 GTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAATCCACGCT 417 Query 21555 TTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAA 21614 | || | |||||| |||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 418 TCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAA 477 Query 21615 ATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATT 21674 | |||| | ||||||||| | | | | ||| ||||||| ||| ||||| | Sbjct 478 AGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGT 537 Query 21675 TTGCC-TTTTCTTTA-ATACAATCAATTGTATCAATAGCTTTTAA-AAG-----ATGAtt 21726 |||| ||||||||| || | || || |||||||| || || ||| | | | Sbjct 538 CTGCCTTTTTCTTTACGCACGGTAAA--GTCTCAATAGCATTGAATAAGAAGTCACGCTG 595 Query 21727 tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTAT 21786 ||| |||| ||| ||| | ||||| || || |||| Sbjct 596 CTTTGCATC----ACGGATATAAGTTTCAATTAGAATCGA--GTACATCTCTGAGTGTAC 649 Query 21787 ATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGA 21846 |||||| || || || || ||||| ||||| ||| || |||| |||||| || Sbjct 650 ATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTG 709 Query 21847 ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAA 21906 | ||||||| | ||||| |||||||| || || || || ||||| ||||| || Sbjct 710 ACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATGCTAA 769 Query 21907 TATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTT 21966 || | | ||||| | ||||| ||| ||||||||| ||| || | |||||| Sbjct 770 TACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCATATCTTT 829 Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010 ||||||||| |||||||| |||||| ||||| || ||||| Sbjct 830 TGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGCCT 873 >seq27324 Length=21994 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/190 (71%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 132434 CCTGGAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTATTTAGAGAATGGGTCTATGGCA 132493 || |||||||| | ||||| ||| | ||||| ||||||||| | | || || || ||| Sbjct 5032 CCGGGAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTAATGCAAGGATCAATAGCA 5091 Query 132494 GATTCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAATA 132553 || ||||| | || || || ||| ||| |||||||| || | | | || | ||| Sbjct 5092 GACAGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGGAACGGG-TAAGATGG-GTAATC 5149 Query 132554 CAATCAATAT--TTTTAATGGGATGTTATGATTCAGATCGTATGATTTGGAAGACTGTAA 132611 | | | ||| |||||||||||||||||||| | ||| | |||||||| || | Sbjct 5150 GATTTAGTATCTTTTTAATGGGATGTTATGATGAGAAATGTAAAGTATGGAAGACAGTCA 5209 Query 132612 CAAAATGTTC 132621 ||||| |||| Sbjct 5210 CAAAA-GTTC 5218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531703484749480