Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 255 6e-63
seq27324 82.4 8e-11
>seq9081
Length=2203
Score = 255 bits (282), Expect = 6e-63
Identities = 590/884 (67%), Gaps = 22/884 (2%)
Strand=Plus/Plus
Query 21138 CATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAATCAC 21197
|||| |||| |||||| | ||| | | ||||| | ||| | |||||||| || |
Sbjct 1 CATCCAATGTGAAAACTTGATCCTGACGACTCGACATGACTCCACTCTTTTGATATTCGC 60
Query 21198 TAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAA 21257
||| || ||| || || || ||||| || || | ||| || |||||||||| |
Sbjct 61 CAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAATTAATTCCATAAATGAGA 120
Query 21258 ATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTA 21317
||||||||| | ||| | | || | | |||| ||| |||||| ||| ||||
Sbjct 121 ATGGATTTTTGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATGATCGGCTA 180
Query 21318 CAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAG 21377
| ||||| || |||| | ||||||| ||||||||||| || | || ||||| ||||| |
Sbjct 181 CGAATTCAATGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTG 240
Query 21378 CTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTAG 21437
| | |||||||| ||||| || || || || || || | | | || |
Sbjct 241 CGTCAGTCAAAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAATTTCAACAA--CTCG 298
Query 21438 ATGTACTAGGGGGATAC--AATAAT-TGTTTAAACATCAAACATGCAAAATCACAATGCA 21494
| | | || || | | ||||| ||||| |||| || |||||||| |||| ||| |
Sbjct 299 TTCTTTT-GGTGGCTTCTGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAA 357
Query 21495 AACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCT 21554
||||| || || || | |||||| || ||||| ||||| ||||||||||| | ||
Sbjct 358 GTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGGCATTAATCCACGCT 417
Query 21555 TTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAA 21614
| || | |||||| |||| ||||| ||| ||||||||| ||||| || |||||||
Sbjct 418 TCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTAAAGAAAATCCCCTCGACAGCAGCAA 477
Query 21615 ATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATT 21674
| |||| | ||||||||| | | | | ||| ||||||| ||| ||||| |
Sbjct 478 AGGCAATAACTCGTTCACCAAAGTTTGCATGCTTACTGGATATCCAATTTAAGGCCCAGT 537
Query 21675 TTGCC-TTTTCTTTA-ATACAATCAATTGTATCAATAGCTTTTAA-AAG-----ATGAtt 21726
|||| ||||||||| || | || || |||||||| || || ||| | | |
Sbjct 538 CTGCCTTTTTCTTTACGCACGGTAAA--GTCTCAATAGCATTGAATAAGAAGTCACGCTG 595
Query 21727 tttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTAT 21786
||| |||| ||| ||| | ||||| || || ||||
Sbjct 596 CTTTGCATC----ACGGATATAAGTTTCAATTAGAATCGA--GTACATCTCTGAGTGTAC 649
Query 21787 ATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGA 21846
|||||| || || || || ||||| ||||| ||| || |||| |||||| ||
Sbjct 650 ATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCTGTTACTTGAACTTCCTG 709
Query 21847 ATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAA 21906
| ||||||| | ||||| |||||||| || || || || ||||| ||||| ||
Sbjct 710 ACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGATGCAGCAAAGAATGCTAA 769
Query 21907 TATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTT 21966
|| | | ||||| | ||||| ||| ||||||||| ||| || | ||||||
Sbjct 770 TACGTGTGAGATAAAGTGACGTTCTGAATCCTTTAATTTTTCCCAGTCACTCATATCTTT 829
Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCT 22010
||||||||| |||||||| |||||| ||||| || |||||
Sbjct 830 TGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAGCCT 873
>seq27324
Length=21994
Score = 82.4 bits (90), Expect = 8e-11
Identities = 135/190 (71%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 132434 CCTGGAAAAAGAGGTTGGTTGAAGATaaaaaaaGATTATTTAGAGAATGGGTCTATGGCA 132493
|| |||||||| | ||||| ||| | ||||| ||||||||| | | || || || |||
Sbjct 5032 CCGGGAAAAAGGCGATGGTTAAAGGTCAAAAAGGATTATTTAATGCAAGGATCAATAGCA 5091
Query 132494 GATTCCGCAGATCTTGTGGTATTAGGTTCTTATTATGGAAAAGGATCAAAGGGAGGAATA 132553
|| ||||| | || || || ||| ||| |||||||| || | | | || | |||
Sbjct 5092 GACAGTGCAGACTTGGTCGTGTTGGGTGCTTTTTATGGAACGGG-TAAGATGG-GTAATC 5149
Query 132554 CAATCAATAT--TTTTAATGGGATGTTATGATTCAGATCGTATGATTTGGAAGACTGTAA 132611
| | | ||| |||||||||||||||||||| | ||| | |||||||| || |
Sbjct 5150 GATTTAGTATCTTTTTAATGGGATGTTATGATGAGAAATGTAAAGTATGGAAGACAGTCA 5209
Query 132612 CAAAATGTTC 132621
||||| ||||
Sbjct 5210 CAAAA-GTTC 5218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531703484749480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |