Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5596 461 9e-125 seq9081 251 9e-62 >seq5596 Length=16775 Score = 461 bits (510), Expect = 9e-125 Identities = 1087/1634 (67%), Gaps = 33/1634 (2%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| |||||||| ||| || | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 62235 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62289 ||| || || || || ||| || | | ||||| |||||| || ||||||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 62290 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62349 |||||| | || || ||| | ||| ||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 62350 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTC 62409 || | || | ||| | |||| |||||| || |||||||| | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 62410 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62469 | ||||| ||||| ||||||||||| ||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 62470 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62529 | | | ||||||| ||||||| | |||||||| ||| | || | ||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 62530 NNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATCG 62585 ||||| ||||| | |||||| || ||||| |||| || || Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGG---AC-ATCCTTCATACGTCTCA 11852 Query 62586 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62645 || | ||| || ||||| | |||||| |||| |||||| || || |||||||| || Sbjct 11853 TAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTC 11912 Query 62646 TCGAAGATCTTCTTATTTAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGA 62703 || || || | | ||||| || ||||| ||| | || |||| | | | Sbjct 11913 TCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCA 11970 Query 62704 GAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62763 ||||| || || ||||||||||||| ||||| ||||| || | |||||| || | Sbjct 11971 ATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTG 12030 Query 62764 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC--- 62820 | || ||||||| || ||||| |||||| || ||||||||||| | ||||| Sbjct 12031 ATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTG 12090 Query 62821 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT---A 62874 |||| || ||||| || ||||||| ||| | |||||| | | | || | Sbjct 12091 TGACTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCT 12147 Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 | |||||||| || ||||||| ||||| | |||||| || || || |||| | | Sbjct 12148 TGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTG 12207 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 |||||| | || ||||| || | ||| || ||| ||||| | ||| ||||||| Sbjct 12208 AATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGAT 12267 Query 62995 TACTCTTTTTG-TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 | | ||| | ||||| ||||||||||| || || | || || || || |||| ||| Sbjct 12268 T-CGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGA 12326 Query 63054 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT 63113 ||||| ||||| || ||| | || | ||||||| | | | ||| | |||| Sbjct 12327 GATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCT 12386 Query 63114 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 63173 ||| ||| | |||| | ||| || || | || || | | | || ||| Sbjct 12387 GCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGA 12446 Query 63174 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63233 || || |||||||| || |||||| | | | | | || |||| |||||| | Sbjct 12447 CAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAG 12506 Query 63234 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 ||||||||||| | ||| ||| | |||||| | | | ||| || ||||| ||||| Sbjct 12507 TCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTT 12566 Query 63294 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63353 || || | ||| || ||| | | || ||| |||||| |||||||| || | || | Sbjct 12567 TTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAAT 12626 Query 63354 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63413 | ||||| ||||| || || || ||||| | || | || || ||||| ||||||||| Sbjct 12627 GCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTC 12686 Query 63414 AACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCA 63473 ||||| || | | ||| || || || ||||| ||||| | ||||| | || | | | Sbjct 12687 AACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAA 12746 Query 63474 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63533 |||||| | || | || ||||| ||||| ||| |||| |||||| | Sbjct 12747 CGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGC 12806 Query 63534 TTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTA 63593 ||||| |||||||| || ||||| || ||||| ||| || ||||| || | Sbjct 12807 TTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAA 12866 Query 63594 GACATTTGGTGACG 63607 |||| ||| |||| Sbjct 12867 GACAATTGAGGACG 12880 Score = 168 bits (186), Expect = 8e-37 Identities = 311/449 (69%), Gaps = 8/449 (2%) Strand=Plus/Plus Query 63655 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63714 ||||||| | |||||||| ||||||||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774 | || || | ||| | ||| || || || | ||| | || || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63834 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 63835 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTG-AA 63893 | ||| | || || ||| ||| || ||| ||| || | ||| || | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 63894 ATAATCGGAGAAT--GT-TTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATC 63950 || || || || | || || || || | || |||| || | | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 63951 ACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCT 64010 ||||||||||| |||| || || || ||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 64011 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 64070 | || |||||||| | ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 64071 TCCAATTCTACCGTTGTTACTCCATTATA 64099 |||| ||| ||||||||||| |||| Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATA 13435 >seq9081 Length=2203 Score = 251 bits (278), Expect = 9e-62 Identities = 572/847 (68%), Gaps = 15/847 (2%) Strand=Plus/Plus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 33058 TCCAATGATATATTTTCCATGAAATCA-AACGGATTGGTAACATTATAAAtttttttAAA 33116 || | ||| || |||||| |||| | || ||||| | |||||| | || | || Sbjct 93 TCAAGTGAAATTAATTCCAT-AAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAG 151 Query 33117 TCCCAATTCAGA-AATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCAC 33175 ||||||||| ||| ||| ||| || |||||||| || ||| ||| | |||| Sbjct 152 TCCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCAC 210 Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235 ||||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 211 AATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTA 270 Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC--AATAA-ATGTT 33292 | || ||||| ||||| ||| ||||| | ||||| | | ||||| ||||| Sbjct 271 CAGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTT 327 Query 33293 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGG 33352 | |||| || ||||| || || | || || || |||||||| ||| ||||| || | Sbjct 328 TGTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTG 387 Query 33353 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33412 | || || | || ||||||| |||||||| |||| |||||| || | || || || Sbjct 388 AGAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTC 447 Query 33413 CAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-- 33470 || |||||| || || || || |||||||||||||||| || || ||| | || Sbjct 448 CACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCAT 507 Query 33471 GCTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 ||| | | |||||| ||| ||||| || ||||| || ||||| || || | || | Sbjct 508 GCTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCT 567 Query 33530 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33589 | || ||||| || | ||| | || ||| | |||||| || || | || Sbjct 568 CAATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAA 627 Query 33590 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33649 ||||| || || || | ||||| || || || || ||||| || || ||| || Sbjct 628 TCGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAG 687 Query 33650 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGT 33709 | || || | || ||||| || |||||||| || || ||||| || || |||| Sbjct 688 CTTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGT 747 Query 33710 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGT 33768 | || ||||| || || ||||| ||| ||||| | | || | | | ||| | Sbjct 748 CTGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCT-TTAAT 806 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCC 33828 || | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| Sbjct 807 TTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCT 866 Query 33829 TCTGCCT 33835 || |||| Sbjct 867 TCAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622716109949320