Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq29526 93.3 5e-14 >seq29526 Length=4968 Score = 93.3 bits (102), Expect = 5e-14 Identities = 206/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Minus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985 |||||||| | ||| || || |||| | ||| | | | || || ||| || || || Sbjct 1050 CCATGTGTAAGATGTCCTCCACAATTAAGAGATAATCCTAGTATTGTATCACCAGGTCTG 991 Query 6986 AGCAACGCATGGTAAACA--GCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTG 7043 || || | | | ||||| || || ||||| || ||||| || || || ||||| || | Sbjct 990 AGTAATGAA--GCAAACACCGCCTGATTTGCTTGCGAACCAGAGTGAGGCTGAACATTAG 933 Query 7044 CGAAATTGCAACTAAACAGTTCTT-TAGCACGCTCAATTGCCAGGTTCTCGATCTCATCG 7102 | || || || ||| |||| |||| | || || || || || || || ||| Sbjct 932 CAAATTTAACACCAAATAGTTTACATAGC-CTATCTATAGCAAGATTTTCAATTCTATCA 874 Query 7103 GCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTA 7162 | | | |||| || | |||||| | ||| |||| ||| || || ||||| ||||| || Sbjct 873 ACATGTTCACAGCCACAGTAATATCTTTTACCTGAATAACCTTCTGCATATTTGTTAGTT 814 Query 7163 AAAATAGAACCTTGCGCTTTCATAACATCATCGGACA--CATAGTTTTCGGATGCAATCA 7220 || |||||||| || |||| ||| || | || || || | |||||||||||||| | Sbjct 813 AAGATAGAACCCTGAGCTTCCATTACTGC-TCT-ACTTGCAAAATTTTCGGATGCAATTA 756 Query 7221 A 7221 | Sbjct 755 A 755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 6487 AGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGA 6546 ||| ||||| || ||||||||||| | || ||||| || | || || |||| |||||| Sbjct 1477 AGCTTTTGCTGCTATAACATGCATCAGTGGCCCACCTTGTAATCCGGGAAAGACAGCAGA 1418 Query 6547 ATTTACTTTCTTGGCGATATCAG--CATCGTTAGTAAGAATGAGACCACCACGAGGGCCG 6604 || | ||| || | | ||||| ||||||| || | || | ||||||||||| || Sbjct 1417 -TTGAATTTTTTTGTG-TATCAATTCATCGTTTGTCATGATTATTCCACCACGAGGACCA 1360 Query 6605 CGCAAAGTTTTATGAGTTGTAGAAGTAACAAC 6636 || | ||||| |||||||| ||||| | ||| Sbjct 1359 CGGAGGGTTTTGTGAGTTGTTGAAGTCATAAC 1328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553148326565160