Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_007022.1
Length=172963
Score E
Sequences producing significant alignments: (Bits) Value
seq29526 93.3 5e-14
>seq29526
Length=4968
Score = 93.3 bits (102), Expect = 5e-14
Identities = 206/301 (68%), Gaps = 10/301 (3%)
Strand=Plus/Minus
Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985
|||||||| | ||| || || |||| | ||| | | | || || ||| || || ||
Sbjct 1050 CCATGTGTAAGATGTCCTCCACAATTAAGAGATAATCCTAGTATTGTATCACCAGGTCTG 991
Query 6986 AGCAACGCATGGTAAACA--GCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTG 7043
|| || | | | ||||| || || ||||| || ||||| || || || ||||| || |
Sbjct 990 AGTAATGAA--GCAAACACCGCCTGATTTGCTTGCGAACCAGAGTGAGGCTGAACATTAG 933
Query 7044 CGAAATTGCAACTAAACAGTTCTT-TAGCACGCTCAATTGCCAGGTTCTCGATCTCATCG 7102
| || || || ||| |||| |||| | || || || || || || || |||
Sbjct 932 CAAATTTAACACCAAATAGTTTACATAGC-CTATCTATAGCAAGATTTTCAATTCTATCA 874
Query 7103 GCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTA 7162
| | | |||| || | |||||| | ||| |||| ||| || || ||||| ||||| ||
Sbjct 873 ACATGTTCACAGCCACAGTAATATCTTTTACCTGAATAACCTTCTGCATATTTGTTAGTT 814
Query 7163 AAAATAGAACCTTGCGCTTTCATAACATCATCGGACA--CATAGTTTTCGGATGCAATCA 7220
|| |||||||| || |||| ||| || | || || || | |||||||||||||| |
Sbjct 813 AAGATAGAACCCTGAGCTTCCATTACTGC-TCT-ACTTGCAAAATTTTCGGATGCAATTA 756
Query 7221 A 7221
|
Sbjct 755 A 755
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/152 (74%), Gaps = 4/152 (3%)
Strand=Plus/Minus
Query 6487 AGCCTTTGCCGCGATAACATGCATTAACGGACCACCCTGAATACCCGGGAAGATAGCAGA 6546
||| ||||| || ||||||||||| | || ||||| || | || || |||| ||||||
Sbjct 1477 AGCTTTTGCTGCTATAACATGCATCAGTGGCCCACCTTGTAATCCGGGAAAGACAGCAGA 1418
Query 6547 ATTTACTTTCTTGGCGATATCAG--CATCGTTAGTAAGAATGAGACCACCACGAGGGCCG 6604
|| | ||| || | | ||||| ||||||| || | || | ||||||||||| ||
Sbjct 1417 -TTGAATTTTTTTGTG-TATCAATTCATCGTTTGTCATGATTATTCCACCACGAGGACCA 1360
Query 6605 CGCAAAGTTTTATGAGTTGTAGAAGTAACAAC 6636
|| | ||||| |||||||| ||||| | |||
Sbjct 1359 CGGAGGGTTTTGTGAGTTGTTGAAGTCATAAC 1328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 553148326565160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |