Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 102 8e-17
seq9081 96.9 3e-15
seq5242 84.2 2e-11
>seq3668
Length=32275
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824
||| |||||| | || || |||||||||||||| ||| | ||||| | ||| | || |
Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCC 30729
Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884
||||| ||||| | ||||| |||||| ||||||||||| || || || ||
Sbjct 30730 TTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 30789
Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944
||||||| | | || | || || |||||| | ||||||| | | | || |||||
Sbjct 30790 TCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTA 30849
Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| || ||||| ||||| || | ||| |||| ||
Sbjct 30850 CAATATCCAAAAGGAATCAACATTGCATTTGGTTCT 30885
>seq9081
Length=2203
Score = 96.9 bits (106), Expect = 3e-15
Identities = 230/343 (67%), Gaps = 11/343 (3%)
Strand=Plus/Plus
Query 119663 TTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT-CATAAACTCGAAAGGATTTG 119721
|||||| || ||||||||||||||||| || || | ||| |||||| ||| ||||||
Sbjct 71 TTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAAT-TAATTCCATAAATGAGAATGGATTTT 129
Query 119722 CAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGA 119781
|| || | |||||| ||||| ||| || | |||| || || || || |
Sbjct 130 TGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATGATCGGCTACGAATTCAA 189
Query 119782 TGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAA 119841
||||||| |||| | | |||||||||||||||| || || | || | || |
Sbjct 190 TGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCA 249
Query 119842 AGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATACTCAACACCTTGGTCTTGGAGA 119901
| || ||||||||||| | || || ||| | || |||||| || | ||||
Sbjct 250 AAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT-TTCAACAACTCGTTCTT----- 303
Query 119902 GCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACAAGCAAAGTCGGTGTGTAGTC 119961
||| | ||| ||||| | ||||| || || |||||||| || ||||
Sbjct 304 --TTGGTGGCTTC-TGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTC 360
Query 119962 CTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCGGG 120004
|||||||||| ||||| ||||| || | | ||||| || ||
Sbjct 361 CTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGG 403
>seq5242
Length=62730
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729
|||| |||||||| |||||||| ||| || || | || || || ||||| |
Sbjct 10536 AAACTCATGATGATTTATGGAATAGTGCACAAATTCAAATGACAAAGGAAGGCAAAATGC 10477
Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789
|||||| | || ||||| ||||| ||||||||| | || ||||| | | || ||
Sbjct 10476 ACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACGGCATCGCCAGAAG 10417
Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849
| | || || | |||||| |||| ||| | | | ||| || || | ||||| |
Sbjct 10416 AAGGTCTTGAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGATGGAAGAGATCCAA 10357
Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATT 71878
|||| | ||| || |||||||||||||||
Sbjct 10356 ACGGGTTTGTTGGCTGCATGTGGAGCATT 10328
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478484834199440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |