Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3668 102 8e-17 seq9081 96.9 3e-15 seq5242 84.2 2e-11 >seq3668 Length=32275 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| |||||| | || || |||||||||||||| ||| | ||||| | ||| | || | Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCC 30729 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | ||||| |||||| ||||||||||| || || || || Sbjct 30730 TTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 30789 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||||||| | | || | || || |||||| | ||||||| | | | || ||||| Sbjct 30790 TCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTA 30849 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| ||||| || | ||| |||| || Sbjct 30850 CAATATCCAAAAGGAATCAACATTGCATTTGGTTCT 30885 >seq9081 Length=2203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 230/343 (67%), Gaps = 11/343 (3%) Strand=Plus/Plus Query 119663 TTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT-CATAAACTCGAAAGGATTTG 119721 |||||| || ||||||||||||||||| || || | ||| |||||| ||| |||||| Sbjct 71 TTCAAAGAAGTTAGTCTTGCCCTCAAGTGAAAT-TAATTCCATAAATGAGAATGGATTTT 129 Query 119722 CAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCGATCTGCCACAAACTCGA 119781 || || | |||||| ||||| ||| || | |||| || || || || | Sbjct 130 TGGTATTATAGACCTTGTCAAGTCCCAATTCGCCTAATAAATGATCGGCTACGAATTCAA 189 Query 119782 TGTATTCGCACATGGATTGCGAATTCATGCCCAACATAGCGACCGGTAAAGCATTGGTAA 119841 ||||||| |||| | | |||||||||||||||| || || | || | || | Sbjct 190 TGTATTCAGACATTAAATCACAATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCA 249 Query 119842 AGAAATCCTTTTCAATGTCGACCGCTTCTACAAACATACTCAACACCTTGGTCTTGGAGA 119901 | || ||||||||||| | || || ||| | || |||||| || | |||| Sbjct 250 AAAATTCCTTTTCAATCTTTACAGCCTCTGTGATAAT-TTCAACAACTCGTTCTT----- 303 Query 119902 GCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGACAAGCAAAGTCGGTGTGTAGTC 119961 ||| | ||| ||||| | ||||| || || |||||||| || |||| Sbjct 304 --TTGGTGGCTTC-TGAATAAGATGTTTGTACATTAAGCATGCAAAGTCACGATGAAGTC 360 Query 119962 CTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGCCGGG 120004 |||||||||| ||||| ||||| || | | ||||| || || Sbjct 361 CTTCGTCTCTCGAAATAAGTTCATTTGAGAATGTCAAACCTGG 403 >seq5242 Length=62730 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 71670 AAACGCATGATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTC 71729 |||| |||||||| |||||||| ||| || || | || || || ||||| | Sbjct 10536 AAACTCATGATGATTTATGGAATAGTGCACAAATTCAAATGACAAAGGAAGGCAAAATGC 10477 Query 71730 ACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGC 71789 |||||| | || ||||| ||||| ||||||||| | || ||||| | | || || Sbjct 10476 ACGGATTTTTGCGAATGTATTGGGCAAAAAAGATTTTAGAATGGACGGCATCGCCAGAAG 10417 Query 71790 AGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTA 71849 | | || || | |||||| |||| ||| | | | ||| || || | ||||| | Sbjct 10416 AAGGTCTTGAAACAGCAATTTATTTAAATGATCGTTTTAATCTTGATGGAAGAGATCCAA 10357 Query 71850 ACGGTTATGTCGGTTGCATGTGGAGCATT 71878 |||| | ||| || ||||||||||||||| Sbjct 10356 ACGGGTTTGTTGGCTGCATGTGGAGCATT 10328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478484834199440