Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq3947 248 2e-60 seq5596 167 6e-36 seq9081 134 4e-26 seq4613 84.2 6e-11 >seq3947 Length=2916 Score = 248 bits (274), Expect = 2e-60 Identities = 440/635 (69%), Gaps = 10/635 (2%) Strand=Plus/Plus Query 111263 TGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCTGTCAACTCATTTTCCACT 111322 ||| || || ||| ||||||| | | |||||| |||||| | ||| |||||| | Sbjct 896 TGGAACTGTCAGTATATTTGGTGCACAAATGCGCTTTAATTTACGGGATCAATTTCCATT 955 Query 111323 TCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTTATTCG 111382 | ||||| || ||| || |||| ||| | | || || ||| | ||||| || Sbjct 956 GTTGACAACCAAACGAGTATTTTGGCGAGGAGTCGCTGAGGAGCTTTTATGGTTCATAAA 1015 Query 111383 CGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGG 111442 || ||| |||| || ||| ||| || ||| || ||||||||| ||||| | Sbjct 1016 AGGTTCCACAGATGCTAAATTGCTTCAAGCGAAGAATATACGAATTTGGGACGGAAACAG 1075 Query 111443 ATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACC 111502 | ||||| || || ||| || ||| || || ||| |||||| | || || Sbjct 1076 TACGCGTGAATTCCTCGATGCATCCGGTTTTAATGAGCGTCAAGTGGGTGATTTGGGTCC 1135 Query 111503 AGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC-ACGACTCAT 111561 |||||| |||||||||||||| || |||||||| | || || | ||||| | | || Sbjct 1136 AGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATAAGA-CATGCGATCATGAAT 1194 Query 111562 ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTAAGAACAACCCAA 111621 |||| ||| |||| |||||||||| | |||| ||||| | ||||| || |||| Sbjct 1195 ATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAACGCATTAAATCTAATCCAA 1254 Query 111622 CTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT-TGGAAAAAATGGCACTT 111680 | ||| || |||||| | ||||| ||||| || | || || | | ||||||||||| Sbjct 1255 ATGATCGACGAATTATTTTAAGTGCCTGGAATCC-AGTGGATATTCCACAAATGGCACTT 1313 Query 111681 CCACCATGTCATCTTATGTGCCAGTTTTATGT---ACACGACGGGATGCTTTCATGCCAA 111737 |||||||||||| | || ||||||||||| | | | || | || | |||||| Sbjct 1314 CCACCATGTCATTGTCTGGTACAGTTTTATGTCGCAAATGGCGAGTTGAGT---TGCCAA 1370 Query 111738 ATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCA 111797 | || || |||| |||||||| ||||| || ||||| |||||||| ||| ||||| Sbjct 1371 TTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATATCGCATCATACGCT 1430 Query 111798 CTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTT 111857 ||| | || | | | || |||||| |||||||| | || || || || || |||| | Sbjct 1431 CTATTGACGTACATGATTGCTCATGTTACAAATTTAAAGCCTGGCGATTTTGTTCATACT 1490 Query 111858 ATCGGAGATGCGCATGTTTACACAAACCACATTGA 111892 | || ||||| ||| ||||||| || |||||||| Sbjct 1491 TTTGGTGATGCTCATATTTACACGAATCACATTGA 1525 >seq5596 Length=16775 Score = 167 bits (184), Expect = 6e-36 Identities = 1002/1587 (63%), Gaps = 36/1587 (2%) Strand=Plus/Minus Query 363591 TCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTT 363650 ||| || ||||||| ||||||||||| |||| || || || |||||||| || | Sbjct 12878 TCCTCAATTGTCTTCATGCTTTCTTCTCTCAATGTCTGATGACTCAATCGAGGGAATTTA 12819 Query 363651 TGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGAT 363710 |||||| | ||| | || || || ||| ||| ||||| |||||||| || | Sbjct 12818 TGACACTTTAAAGCAATGCGCGCTAATTAGCAAATCAGCAGGTGGAATTGGCGTTAATGT 12759 Query 363711 CCACAATGTTCGTGCACA--GAACAGTTACATTCGCGGCACAGG-GGGATACTCGAATGG 363767 || | ||||| || | | ||| || || || ||| ||||| |||||||| Sbjct 12758 TCATTGTATTCGTTCAAAAGGGACA--TATATAGCTGGTACAAATGGGATT-TCGAATGG 12702 Query 363768 GCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGG 363827 || || || ||| | | || | | ||||| || | || || || || ||||| Sbjct 12701 TCTCGTACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGGTAA 12642 Query 363828 AAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTT 363887 || || || || ||||| | ||| | || ||| |||| ||| |||||||||| Sbjct 12641 TAAACGTCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGAGTT 12582 Query 363888 TCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGC 363947 ||| || | |||||| || |||||||| ||| | ||||| | ||| |||| ||||| Sbjct 12581 TCTAGATTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTATGC 12522 Query 363948 ACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTT 364007 | ||| || ||||| |||||| | || || || | | | ||||| | | Sbjct 12521 TTTATGGATTCCTGACTTGTTTATGCAACGTGTTGAAAACAATGAAATGTGGTCTTTAAT 12462 Query 364008 TTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATA 364067 || || || ||||||||||||| || | ||| | || | || |||||| Sbjct 12461 GTGTCCTCATAGCTGTCCAGGTCTTTATGAGACTTATGGTAAAGAATTTGAAAATCTATA 12402 Query 364068 ----CGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCG-CACAGAAGCTA 364122 ||| |||||| | || ||| | | | | ||| | | |||| | || Sbjct 12401 TATTCGA----TATGAAGCAGAAGGAC-GATTTATTCGTCAAGTAAAGGCACAAGATTTA 12347 Query 364123 TGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGAT 364182 |||||||| || || || || || |||||||||||||||| |||||| |||| || ||| Sbjct 12346 TGGTTTGCAATTATTGAATCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGAT 12287 Query 364183 TCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCT-ATG 364241 | || || || || || || || ||| | ||||| ||||| | | | ||| | ||| Sbjct 12286 GCATGTAATCGTAAATCGAATCAACAGAATCTTGGAACAATCC-GTTGCTCAAATTTATG 12228 Query 364242 TACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGAT 364301 ||| || ||| | |||| | | || || ||| || ||||| | || || || Sbjct 12227 TACTGAAATTGTCCAATATTCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCAAT 12168 Query 364302 CGCGCTTCCGGCGTTTGTAAA---AGATGGTACT---TTTGACCACCAGCATCTTTATGA 364355 || | |||||| || | || ||| | ||| ||| | | | || Sbjct 12167 TGCCTTAAATATGTTTGTCAAGCCAAATCGTAAAGAATATGATTTCCATAAATTGAAGGA 12108 Query 364356 CGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAAT 364415 || || | | || | ||| | | || |||| || |||| |||||| | Sbjct 12107 AGTCACAAAGATAGTCACAAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAGT 12048 Query 364416 TCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCT 364475 | ||||| | || || || | | ||||| || || || |||| | || || | Sbjct 12047 TGAAGAAGCTAAACGATCAAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGATT 11988 Query 364476 CGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAA 364535 ||||| | ||||| || | | ||| ||| || || ||| ||| | |||| Sbjct 11987 AGCTGATGCCTTTATATTGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAAA 11928 Query 364536 TAAGGAGATCTTTGAAACAATGTATTTTGCCGCAAT-GACTGCTTCGTGTGATTTGGC-- 364592 | | | || ||||| ||||| |||| || || | || | | ||||| ||||| Sbjct 11927 TCAACAAATATTTGAGACAATTTATTATGGAGCTTTAGAGTCGAGC-TGTGAATTGGCTG 11869 Query 364593 AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCA 364652 |||||| |||| || || ||||| || | || | || | || | ||| || Sbjct 11868 AAAAACTT--GGAACTTATGAGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACA 11811 Query 364653 GTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAA 364712 | |||| | ||| | || ||| ||| | ||| | ||||| | || || Sbjct 11810 ATATGATATGTGGGAAAAGACACCAACTGACTTGTGGGATTGGGAAGCATTAAAAGAAAA 11751 Query 364713 CGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC-AGCGCCCATGCCCACGGCTTCTA 364771 | ||||| |||| ||| || || | |||| ||| || ||||| || || || | Sbjct 11750 AATCAAGAATTTTGGTCTTCGTAATTCATT-GTTATTAGCACCAATGCCAACTGCATCAA 11692 Query 364772 CTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCAC 364831 | || ||||| | || || || ||| | || ||||||| ||||| ||| ||||| | Sbjct 11691 CAGCTCAGATTTTAGGTAATAATGAGAGTTTTGAACCGTACACAAGTAATGTTTATAATC 11632 Query 364832 GCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCG 364891 | || || ||| ||||| |||| || |||||| | | || | |||||| | | | Sbjct 11631 GTCGTGTGCTTAGTGGAGAGTTTCAAGTTGTTAATCATCATCTTATTAAGGATTTGACAG 11572 Query 364892 ACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGC 364951 | || || | |||| ||| ||||||||| | || || | |||||| || | | Sbjct 11571 AACGTGGTTTATGGGATGATGACATGAAGAATCAAATTATTGGAAATAATGGCTCAATAC 11512 Query 364952 AGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTT 365011 | ||| | | |||| || ||| | || ||||| ||||| ||||||||||| | Sbjct 11511 AAGCTATTGATGAAATTCCTGATGATATTAAAAACATTTATAAAACAGTATGGGAAATAT 11452 Query 365012 CCATGCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGT 365071 | | || | ||| | ||||| || ||||| || ||||||||| ||| || || | Sbjct 11451 CTGTCAAGACACAAATTCAAATGGCAGCTGATCGTGGAGCTTTTATCGATCAAAGTCAAT 11392 Query 365072 CGTTTAACGTATTCATG--ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTA 365129 | || || |||||||| | | |||| | | || | ||||| || ||||| || Sbjct 11391 CATTCAA--TATTCATGTAGCGGAACCAAATTATGGGAAATTGACATCTATTCATTTTTA 11334 Query 365130 CGGGTGGAAATCCGGTCTTAAGACAGG 365156 || ||||| | || ||||| || || Sbjct 11333 TGGATGGAAGTTGGGACTTAAAACTGG 11307 >seq9081 Length=2203 Score = 134 bits (148), Expect = 4e-26 Identities = 334/506 (66%), Gaps = 6/506 (1%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAA 22491 ||||| |||||||| ||||| | || ||||| || | | | | || || | ||| Sbjct 550 AAGAAAAAGGCAGACTGGGCCTTAAATTGGATATCCAGTAAGCATGCAAACTTTGGTGAA 491 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || ||||||| ||||||| || || || ||||||||| |||| ||| |||||| Sbjct 490 CGAGTTATTGCCTTTGCTGCTGTCGAGGGGATTTTCTTTAGTGGAAGCTTTGCAGCAATC 431 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| | || || |||| | | ||||| ||| | || || |||||||| | ||| Sbjct 430 TTTTGGATTAAGAAGCGTGGATTAATGCCAGGTTTGACATTCTCAAATGAACTTATTTCG 371 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||| || || |||||| || ||||| || | | || || ||| | ||||| Sbjct 370 AGAGACGAAGGACTTCATCGTGACTTTGCATGCTTAATGTA---CAAACATCTTATTCAG 314 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || | ||| | ||| || |||| ||||| ||| | || || | ||||| | Sbjct 313 AAGCCACCAAAAGAACGAGTTGTTGAAATTATCACAGAGGCTGTAAAGATTGAAAAGGAA 254 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 ||| | || || | ||||||| | | || || ||| || | |||| | | Sbjct 253 TTTTTGACTGACGCACTTCCAGTAAAGATGTTGGGCATGAATTGTGATTTAATGTCTGAA 194 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| |||| || || |||| | ||||| | | || || ||| ||||| Sbjct 193 TACATTGAATTCGTAGCCGATCATTTATTAGGCGAATTGGGACTTGACAAGGTCTATAAT 134 Query 22852 GTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTC 22911 | |||||||| || |||||| | ||||||||||| || ||||| || ||||| Sbjct 133 ACCAAAAATCCATTCTCATTTATGGAATTAATTTCACTTGAGGGCAAGACTAACTTCTTT 74 Query 22912 GAAAAAAGAGTTGGTGAATACCAAAA 22937 ||| || ||||| ||||| ||||| Sbjct 73 GAACGAAAGGTTGGCGAATATCAAAA 48 >seq4613 Length=19342 Score = 84.2 bits (92), Expect = 6e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 13055 GTGCTTGTGCCTGTCGTTCATTTCGTTTATCAAGCTCTTTCTTTTTCAAAACAGGTGGCT 13114 |||||| | | | |||||| ||||| | | |||| |||||| | | ||||| | Sbjct 173 GTGCTTCTTCACGACGTTCAGCACGTTTGTTTAACTCTCCACTTTTCATATCTGGTGGTT 232 Query 13115 TTCCGTCAAAAACATAGACGGGTTTAATTCCTGCTTCAATTAATCGAATGGTTCGGTAAA 13174 |||| |||||||||||||| || || ||||| || | | |||||| || || || | Sbjct 233 TTCCATCAAAAACATAGACAGGCTTGATTCCGTTGTCCAAAAGTCGAATTGTACGATAGA 292 Query 13175 AAATACCTGTTAAATGTGAAGTCACTTCACC 13205 ||||||| |||||||||| || |||||| Sbjct 293 AAATACCCATTAAATGTGATGTTGTTTCACC 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302858017307414