Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 98.7 9e-16
seq3668 96.9 3e-15
>seq8363
Length=52898
Score = 98.7 bits (108), Expect = 9e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| || || || || | |||||| |||||||||| |||| |
Sbjct 26555 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCCATC 26497
Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
||||| || || | || || || ||| || |||||||| || ||||| |||||
Sbjct 26496 GGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCA 26437
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||| || |||| | | ||| || ||| | || |||| | | | ||||| || ||
Sbjct 26436 ACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAA 26377
Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
||||| ||||| || ||| |||| ||||||||
Sbjct 26376 TATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344
>seq3668
Length=32275
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| |||||| | || || |||||||||||||| ||| | || || | ||||| ||| |
Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCC 30729
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
||||| ||||| | ||||| |||||| ||||||||||| || || || ||
Sbjct 30730 TTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 30789
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
|||||| | | || | || || || ||| | ||||||| | | | || || ||
Sbjct 30790 TCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTA 30849
Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || ||||| ||||| ||| | ||||| ||
Sbjct 30850 CAATATCCAAAAGGAATCAACATTGCATTTGGT 30882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429780497119935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |