Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq8363 98.7 9e-16 seq3668 96.9 3e-15 >seq8363 Length=52898 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| || || || || | |||||| |||||||||| |||| | Sbjct 26555 ATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTCGA-GCCATC 26497 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | || || || ||| || |||||||| || ||||| ||||| Sbjct 26496 GGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCCTCCAGATCA 26437 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | | ||| || ||| | || |||| | | | ||||| || || Sbjct 26436 ACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAGCGACTACAA 26377 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| || ||| |||| |||||||| Sbjct 26376 TATTCAGAAAGAGTCAACACTTCACTTAGTGTT 26344 >seq3668 Length=32275 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || |||||||||||||| ||| | || || | ||||| ||| | Sbjct 30670 CAAGATGCAAATCTTCGTCAAAACATTAACTGGTAAAACCATCACTTTGGAAGTTGAGCC 30729 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 ||||| ||||| | ||||| |||||| ||||||||||| || || || || Sbjct 30730 TTCTGACACTATCGAAAATGTCAAGGCAAAGATCCAAGACAAAGAAGGAATTCCACCAGA 30789 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 |||||| | | || | || || || ||| | ||||||| | | | || || || Sbjct 30790 TCAACAACGTTTAATCTTCGCTGGTAAACAATTGGAAGATGGACGTACATTGAGTGACTA 30849 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || || ||||| ||||| ||| | ||||| || Sbjct 30850 CAATATCCAAAAGGAATCAACATTGCATTTGGT 30882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429780497119935