Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq8363 91.5 1e-13 >seq8363 Length=52898 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 115277 AGATTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACG 115336 ||||| | ||||| || || |||||||| | ||||| || || |||||| ||||| Sbjct 26564 AGATTCACCATGCAGATCTTCGTCAAAACCTTGACGGGTAAGACAATTACCCTCGAAGTC 26505 Query 115337 GAGTCCAGCG-ACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCC 115395 ||| ||| || |||| ||| | | || || |||||| ||||||||||| | || Sbjct 26504 GAG-CCATCGGACACGATTGAAAATGTTAAGGCTAAAATTCAAGATAAAGAAGGAATTCC 26446 Query 115396 CGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGC 115455 ||||| ||| || | || | ||| || ||||||||||| |||| || || Sbjct 26445 TCCAGATCAACAACGATTGATCTTTGCCGGTAAACAATTAGAGGATGGACGCACATTGAG 26386 Query 115456 CGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || || ||||| |||||||| || | || | |||||| | | ||||| || Sbjct 26385 CGACTACAATATTCAGAAAGAGTCAACACTTCACTTAGTGTTGCGCCTTCGAGGTGG 26329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425190157993240