Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq5577 233 1e-56 seq8363 129 4e-25 seq3668 122 6e-23 seq11587 116 2e-21 >seq5577 Length=36082 Score = 233 bits (258), Expect = 1e-56 Identities = 290/393 (74%), Gaps = 8/393 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||||||| | || || ||||||||||| | ||| | || ||||| |||||||| Sbjct 7043 ATGGGGACTTTAAATGTCAATCGTAATGTTACTGACCTTTATTATCGCTATAAAATGCCC 6984 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 || || | ||||| || |||||||| ||||| || |||||||| ||||| || |||||| Sbjct 6983 CGAATTTTGGCCAAAGTTGAGGGTAAAGGAAATGGAATTAAAACTGTCATCGTTAACATG 6924 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || ||||| | ||||| || || || || || |||||||| || || Sbjct 6923 GCAGAAGTTGCAAAGGCATTAAATCGCCCAGCAACATATCCAACAAAATATTTTGGATGT 6864 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTTAACGGATCG 6401 |||||||| ||||| || ||||||||||| ||||| ||||| || ||||| || |||||| Sbjct 6863 GAACTTGGAGCTCAAACTCAGTTTGATCATAAAAATGAGCGTTTTATCGTCAATGGATCG 6804 Query 6402 CATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGT 6461 ||| | | | || |||| ||||| ||||| || || ||||| |||| ||| ||||| Sbjct 6803 CATGATGCAACTAAATTGCAAGACTTGCTTGATGGTTTCATTCGAAAGTATGTCTTGTGT 6744 Query 6462 CGGGAATGCGATAACCCGGAGACCGAGCTTA----TTGTGTCTACCAAGAGAAACACCAT 6517 | ||||| || || || || || || |||| |||| ||| ||| |||| | || Sbjct 6743 CCAGAATGTGACAATCCTGAAACGGA-CTTAACTGTTGTCGCTAAAAAG-GAAATA--AT 6688 Query 6518 CTCTCAGGGCTGCAAAGCGTGCGGTTACCATGG 6550 || || | || || || |||||||| ||||| Sbjct 6687 TTCGCAAAGTTGTAAGGCTTGCGGTTATCATGG 6655 >seq8363 Length=52898 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||| | |||||||| || ||||| || ||| || ||||||||||| || Sbjct 26328 ACCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCT 26387 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || ||||||||||| |||||||| || | ||||||||||| | || Sbjct 26388 CAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGG 26447 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | |||||||| || |||||| ||| ||||| | | || || || || Sbjct 26448 AATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGAC 26507 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | ||||| || ||||||||||||||||| ||||| ||||||||| Sbjct 26508 TTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATG 26556 >seq3668 Length=32275 Score = 122 bits (134), Expect = 6e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | || |||||||| |||||||| ||| Sbjct 30902 TACCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCAC 30843 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| |||| | || || |||||||| || || || |||| ||||||||||| | | Sbjct 30842 TCAATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTG 30783 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||||| || ||| ||| ||||| | || ||| || | |||| Sbjct 30782 GAATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAA 30723 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || |||||||| || || ||||| ||||| || ||||| || Sbjct 30722 CTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATCTT 30671 >seq11587 Length=1097 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 459 CTCTCTATTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 400 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||||||| Sbjct 399 GGTAATATTTAGCCTTA 383 Score = 100 bits (110), Expect = 2e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 607 CTCTCTATTCAGAGTGATTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 548 Query 20007 GGTAATATTT 20016 |||||||||| Sbjct 547 GGTAATATTT 538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334826053470587