Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5596 452 5e-122 seq9081 271 1e-67 >seq5596 Length=16775 Score = 452 bits (500), Expect = 5e-122 Identities = 1085/1634 (66%), Gaps = 33/1634 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 || |||||||| | | | || | ||| || | || || |||||||| ||||| || Sbjct 11259 GTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTCCAGTTTTAAGT 11318 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | ||||||| |||||||| ||| || | ||| |||| | || || |||| | Sbjct 11319 CCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTGGTTCCGCTACA 11378 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 || ||||| | ||||||||||||||||| || ||||| | || || ||||||| || Sbjct 11379 TGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATT 11438 Query 62030 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62089 ||||| | |||||||| | |||||||||| |||||||| || |||| Sbjct 11439 TGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATATCATCAGGAA-- 11496 Query 62090 TTTG-----TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144 ||| || || || || ||| || | | ||||| |||||| || ||||||| Sbjct 11497 TTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTCATGTCATCAT 11556 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 |||||| | || || ||| | ||| ||||| ||||||| |||||||| |||| Sbjct 11557 CCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTC 11616 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 || | || | ||| | |||| |||||| || |||||||| | | ||||||||| | Sbjct 11617 CACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTAC 11676 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 | ||||| ||||| ||||||||||| ||||| ||||| | || || ||| | ||||| Sbjct 11677 CTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAATTACGAAGAC 11736 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384 | | | ||||||| ||||||| | |||||||| ||| | || | ||| Sbjct 11737 CAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTTGGTGTCTTTT 11796 Query 62385 NNNNNNNNNNNNNTTGTAGAATACC----GTTACTGGCGTACGATCCTACATATGTATCG 62440 ||||| ||||| | |||||| || ||||| |||| || || Sbjct 11797 CCCACATATCATATTGTAATATACCTTTTGATACTGG---AC-ATCCTTCATACGTCTCA 11852 Query 62441 TATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTT 62500 || | ||| || ||||| | |||||| |||| |||||| || || |||||||| || Sbjct 11853 TAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTC 11912 Query 62501 TCGAAGATCTTCTTATTTAGATCTTGCGCTTC--CAGGCTATCAAATGGATAATTTAAGA 62558 || || || | | ||||| || ||||| ||| | || |||| | | | Sbjct 11913 TCAAATATTTGTTGATTTAATAATTTAGCTTCATCAGAC--TCGTATGGCATTCTCATCA 11970 Query 62559 GAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAG 62618 ||||| || || ||||||||||||| ||||| ||||| || | |||||| || | Sbjct 11971 ATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTG 12030 Query 62619 AGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC--- 62675 | || ||||||| || ||||| |||||| || ||||||||||| | ||||| Sbjct 12031 ATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTG 12090 Query 62676 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCT---A 62729 |||| || ||||| || ||||||| ||| | |||||| | | | || | Sbjct 12091 TGACTAT--CTTTG-TGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGGCT 12147 Query 62730 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789 | |||||||| || || |||| ||||| | |||||| || || || |||| | | Sbjct 12148 TGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACTTG 12207 Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849 |||||| | || ||||| || | ||| || ||| ||||| | ||| ||||||| Sbjct 12208 AATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGAT 12267 Query 62850 TACTCTTTTTG-TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 | | ||| | ||||| ||||||||||| || || | || || || || |||| ||| Sbjct 12268 T-CGATTTACGATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGA 12326 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 ||||| ||||| || ||| | || | ||||||| | | | ||| |||| Sbjct 12327 GATTCAATAATTGCAAACCATAAATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCT 12386 Query 62969 CTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGA 63028 ||| ||| | |||| | ||| || || | || || | | || || ||| Sbjct 12387 GCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGA 12446 Query 63029 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 63088 || || |||||||| || |||||| | | | | | || |||| |||||| | Sbjct 12447 CAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAG 12506 Query 63089 TCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63148 ||||||||||| | ||| ||| | |||||| | | | ||| || ||||| ||||| Sbjct 12507 TCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTT 12566 Query 63149 TTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATA 63208 || || | ||| || ||| | | || ||| |||||| |||||||| || | || | Sbjct 12567 TTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAAT 12626 Query 63209 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 63268 | ||||| ||||| || || || ||||| | || | || || ||||| ||||||||| Sbjct 12627 GCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTC 12686 Query 63269 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCA 63328 ||||| || | | |||||| || | ||||| || || | ||||| | || | | | Sbjct 12687 AACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAA 12746 Query 63329 CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGT 63388 |||||| | || | || ||||| ||||| ||| |||| |||||| | Sbjct 12747 CGAATACAATGAACATTAACGCCAATTCCACCTGCTGATTTGCTAATTAGCGCGCATTGC 12806 Query 63389 TTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 ||||| || ||||| || ||||| || ||||| ||| || ||||| || | Sbjct 12807 TTTAAAGTGTCATAAATTCCCTCGATTGAGTCATCAGACATTGAGAGAAGAAAGCATGAA 12866 Query 63449 GACATTTGGTGACG 63462 |||| ||| |||| Sbjct 12867 GACAATTGAGGACG 12880 Score = 156 bits (172), Expect = 5e-33 Identities = 319/467 (68%), Gaps = 8/467 (2%) Strand=Plus/Plus Query 63510 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63569 ||||||| | |||||||| ||||||||||||| || |||||| | |||||| || | Sbjct 12991 TTTCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAA 13050 Query 63570 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63629 | || || | ||| | ||| || || || | ||| | || || || || || |||| Sbjct 13051 CAGCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACA 13110 Query 63630 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63689 ||| | ||| || |||||||||||||||||||||||| || ||||| || || | Sbjct 13111 GATAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCGATCATAGA 13170 Query 63690 TAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTG-AA 63748 | ||| | || || ||| ||| || ||| ||| | | ||| | | | | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCT-TATGATGGAATTCGCTA 13229 Query 63749 ATAATAGGAAAAT--GT-TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 || || || | | || || || || | || |||| || | | ||| ||||| Sbjct 13230 ATCATTGGGGATTTAGTCTTTAGATATTCA--TTTTCCATA-TTATAAAGATCATCCATG 13286 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 ||||||||||| |||| || || |||||||| || || || | ||| ||||| || ||| Sbjct 13287 ACTTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCT 13346 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | || |||||||| | ||| | |||||| || |||||| |||| ||||| | | | Sbjct 13347 AAAACAGCATAATCTGCATGATCTGTAGTCATCGTTGCTGCTGTTTCAGCTGCTAAATTA 13406 Query 63926 TCCAATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 |||| ||| |||||||| || |||| | || | ||| || || Sbjct 13407 TCCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 271 bits (300), Expect = 1e-67 Identities = 574/846 (68%), Gaps = 13/846 (2%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| ||||| | ||||| ||||| || || | ||| || || ||||| || || Sbjct 33 GACATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCC 92 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 || | ||| || |||||| || ||||||||| | |||||| | || | || | Sbjct 93 TCAAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGT 152 Query 32475 CCCAATTCAGA-AATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 |||||||| ||| ||| ||| || || ||||| || ||| ||| | ||||| Sbjct 153 CCCAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACA 211 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 |||||| || | | || |||||||| || |||| | |||||| | |||||| || Sbjct 212 ATTCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTAC 271 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATAC--AATAA-ATGTTT 32650 || ||||| ||||| ||| ||||| | ||||| | | ||||| |||||| Sbjct 272 AGCCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTT 328 Query 32651 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 32710 |||| || ||||| || || | || || || |||||||| ||| | ||| || || Sbjct 329 GTACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGA 388 Query 32711 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCC 32770 || || | || ||||||| |||||||| |||| |||||| || | ||||| ||| Sbjct 389 GAATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCC 448 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--G 32828 | ||||||||| || || || || ||||||||||||| || || ||| | || | Sbjct 449 ACTAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATG 508 Query 32829 CTGTCATG-TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 || | | |||||| ||| ||||| || ||||| || ||||| || || | ||||| Sbjct 509 CTTACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTC 568 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 32947 |||||||| || | ||| | || ||| | ||| || ||||| | || Sbjct 569 AATAGCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAAT 628 Query 32948 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGC 33007 ||||| || || || | ||||| || || ||||| ||||| || ||| ||| ||| Sbjct 629 CGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGC 688 Query 33008 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTC 33067 || || | || ||||| || |||||||| ||| || ||||| || || ||||| Sbjct 689 TTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTC 748 Query 33068 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAAT-ATTTTTCGTCTGGTGTTAGTT 33126 || ||||| || || ||||| ||| ||||| | | || | | | ||| || Sbjct 749 TGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCT-TTAATT 807 Query 33127 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 33186 | | ||| ||| | |||||||| |||| ||| |||||||| |||||||| || ||| | Sbjct 808 TTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTT 867 Query 33187 CTGCCT 33192 | |||| Sbjct 868 CAGCCT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633396946289200