Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9081 372 3e-98 seq10691 105 7e-18 >seq9081 Length=2203 Score = 372 bits (412), Expect = 3e-98 Identities = 591/841 (70%), Gaps = 10/841 (1%) Strand=Plus/Plus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||| || |||| ||||| ||||| ||||| ||| ||||||||| || ||||| || || Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94 Query 92850 CAAAGATATCGAATTCACTA---GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 | || || ||||| || | || |||||| |||| ||||| ||| ||| Sbjct 95 AAGTGAAATT-AATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTC 153 Query 92907 TCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966 ||| ||| ||||| ||| ||||| ||||| ||||| | |||||| |||||||||| Sbjct 154 CCAATTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAAT 213 Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026 |||| || | | ||| || || ||||| ||||| || || || || || || | Sbjct 214 TCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAG 273 Query 93027 CTTCTTTCAAGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTAC 93085 | ||| | | ||||| | |||| | || |||||||| || || | | || |||||| Sbjct 274 CCTCTGTGATAATTTCAACAACTCGTTCT-TTTGGTGGCTTCTGAATAAGATGTTTGTAC 332 Query 93086 ATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT 93145 |||||||| |||||||| ||| | |||||||||| || || | ||||| |||| Sbjct 333 ATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAAT 392 Query 93146 GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaa 93205 || |||||||| | | ||| || ||||| | |||||| |||| ||||| || ||| | Sbjct 393 GTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTA 452 Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA 93265 || || || || || || || ||||| || | || ||||| |||| ||||| ||| Sbjct 453 AAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTA 512 Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 ||| ||||| ||||| ||||| || || |||||||| | || |||| || || ||| Sbjct 513 CTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATA 572 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 || || |||| | | || |||| | | ||| || || || || || |||| | || Sbjct 573 GCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAATCGAG 632 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 ||||| || || || ||||| ||||| |||||||||||||| || || ||| |||||| Sbjct 633 TACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCT 692 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 || | || ||||| ||| |||| || | | || ||||| || || || || ||| Sbjct 693 GTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGAT 752 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATG--TTTCTCATCATCTTTAAGCTTAT 93563 || ||||| || || |||| || ||||| || |||| | ||| || | || | Sbjct 753 GCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGA--ATCCTTTAATTTTT 810 Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623 |||| || | ||||||||| | ||||||||||||||| ||||| || |||||| | Sbjct 811 CCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAG 870 Query 93624 C 93624 | Sbjct 871 C 871 >seq10691 Length=6972 Score = 105 bits (116), Expect = 7e-18 Identities = 71/77 (92%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326 || ||||||||| |||||||||||||||||||||| |||||||||| || |||||||||| Sbjct 6281 AGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATCTGGGAGCGTGG 6340 Query 126327 GTTCGAACCCCACACCT 126343 |||||||||||||| || Sbjct 6341 GTTCGAACCCCACATCT 6357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556654225525480