Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq9081 372 3e-98
seq10691 105 7e-18
>seq9081
Length=2203
Score = 372 bits (412), Expect = 3e-98
Identities = 591/841 (70%), Gaps = 10/841 (1%)
Strand=Plus/Plus
Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849
||| || |||| ||||| ||||| ||||| ||| ||||||||| || ||||| || ||
Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94
Query 92850 CAAAGATATCGAATTCACTA---GTGATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906
| || || ||||| || | || |||||| |||| ||||| ||| |||
Sbjct 95 AAGTGAAATT-AATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTC 153
Query 92907 TCAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAAT 92966
||| ||| ||||| ||| ||||| ||||| ||||| | |||||| ||||||||||
Sbjct 154 CCAATTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAAT 213
Query 92967 TCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGG 93026
|||| || | | ||| || || ||||| ||||| || || || || || || |
Sbjct 214 TCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAG 273
Query 93027 CTTCTTTCAAGATTTCTATTACTC-TACTATTTGGTGGTTTTTGTACGACATAATTGTAC 93085
| ||| | | ||||| | |||| | || |||||||| || || | | || ||||||
Sbjct 274 CCTCTGTGATAATTTCAACAACTCGTTCT-TTTGGTGGCTTCTGAATAAGATGTTTGTAC 332
Query 93086 ATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAAT 93145
|||||||| |||||||| ||| | |||||||||| || || | ||||| ||||
Sbjct 333 ATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAAT 392
Query 93146 GTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaa 93205
|| |||||||| | | ||| || ||||| | |||||| |||| ||||| || ||| |
Sbjct 393 GTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTA 452
Query 93206 aaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTA 93265
|| || || || || || || ||||| || | || ||||| |||| ||||| |||
Sbjct 453 AAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTA 512
Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
||| ||||| ||||| ||||| || || |||||||| | || |||| || || |||
Sbjct 513 CTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATA 572
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385
|| || |||| | | || |||| | | ||| || || || || || |||| | ||
Sbjct 573 GCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAATCGAG 632
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
||||| || || || ||||| ||||| |||||||||||||| || || ||| ||||||
Sbjct 633 TACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCT 692
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
|| | || ||||| ||| |||| || | | || ||||| || || || || |||
Sbjct 693 GTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGAT 752
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATG--TTTCTCATCATCTTTAAGCTTAT 93563
|| ||||| || || |||| || ||||| || |||| | ||| || | || |
Sbjct 753 GCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGA--ATCCTTTAATTTTT 810
Query 93564 CCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTG 93623
|||| || | ||||||||| | ||||||||||||||| ||||| || |||||| |
Sbjct 811 CCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGCTTCAG 870
Query 93624 C 93624
|
Sbjct 871 C 871
>seq10691
Length=6972
Score = 105 bits (116), Expect = 7e-18
Identities = 71/77 (92%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC-TC-GGGAGCGTGG 126326
|| ||||||||| |||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct 6281 AGATTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATCTGGGAGCGTGG 6340
Query 126327 GTTCGAACCCCACACCT 126343
|||||||||||||| ||
Sbjct 6341 GTTCGAACCCCACATCT 6357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556654225525480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |