Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq10252 105 1e-17
>seq10252
Length=19166
Score = 105 bits (116), Expect = 1e-17
Identities = 207/304 (68%), Gaps = 8/304 (3%)
Strand=Plus/Plus
Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625
||||| ||||| |||| || ||||| |||||||| || ||||| ||| | ||| |
Sbjct 14180 CGTTCAATTCCATGCGTTGTTGATGGTTTCAAGCCAGGTCAACGTAAAATCATATTTACA 14239
Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685
|| || || ||| | ||| |||||||||| || || |||||| ||| |
Sbjct 14240 TGCTTAAAACGTAACGATAAGAAGGAAGTTAAGGTCGCACAATTGGCTGGTTCTGTTGCT 14299
Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTC----TGCAGGGTGCCATTGTAGGCAT 218741
||||| || || ||||||||||| || || ||| ||| | ||| | |
Sbjct 14300 GAAATGAGTGCATATCATCACGGTGA--AGTTTCACTTTGC--GGTACAATTATTAATTT 14355
Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
||| || ||||||| || ||||| ||||| || ||||| | || ||||||||||||||
Sbjct 14356 GGCTCAAAACTATGTTGGAAGTAATAACATTAATTTGCTTCAACCTAACGGTCAGTTTGG 14415
Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861
| | ||| ||| || ||||| ||| ||| | | | || ||||| |||| | | ||
Sbjct 14416 TACACGTTTATCAGGCGGAAAAGATTCTGCAAGTCCTCGTTACATCTTCACAATGCTTTC 14475
Query 218862 GCCC 218865
|||
Sbjct 14476 ACCC 14479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027445978868357
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |