Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10252 105 1e-17 >seq10252 Length=19166 Score = 105 bits (116), Expect = 1e-17 Identities = 207/304 (68%), Gaps = 8/304 (3%) Strand=Plus/Plus Query 218566 CGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCC 218625 ||||| ||||| |||| || ||||| |||||||| || ||||| ||| | ||| | Sbjct 14180 CGTTCAATTCCATGCGTTGTTGATGGTTTCAAGCCAGGTCAACGTAAAATCATATTTACA 14239 Query 218626 GCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCC 218685 || || || ||| | ||| |||||||||| || || |||||| ||| | Sbjct 14240 TGCTTAAAACGTAACGATAAGAAGGAAGTTAAGGTCGCACAATTGGCTGGTTCTGTTGCT 14299 Query 218686 GAAATTTCTGGCTACCATCACGGTGAGCAGAGTC----TGCAGGGTGCCATTGTAGGCAT 218741 ||||| || || ||||||||||| || || ||| ||| | ||| | | Sbjct 14300 GAAATGAGTGCATATCATCACGGTGA--AGTTTCACTTTGC--GGTACAATTATTAATTT 14355 Query 218742 GGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||| || ||||||| || ||||| ||||| || ||||| | || |||||||||||||| Sbjct 14356 GGCTCAAAACTATGTTGGAAGTAATAACATTAATTTGCTTCAACCTAACGGTCAGTTTGG 14415 Query 218802 TTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTC 218861 | | ||| ||| || ||||| ||| ||| | | | || ||||| |||| | | || Sbjct 14416 TACACGTTTATCAGGCGGAAAAGATTCTGCAAGTCCTCGTTACATCTTCACAATGCTTTC 14475 Query 218862 GCCC 218865 ||| Sbjct 14476 ACCC 14479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027445978868357