Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8363 149 1e-30 seq3668 143 5e-29 seq8700 102 2e-16 >seq8363 Length=52898 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||||||||| || ||||| || || |||||||| || || || || ||| Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | ||||| ||||| || || ||||| || || | || |||||| || || ||| Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || |||||||| || ||||| || || || ||||| | || || ||| Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || ||||| | ||| |||||||| |||||||| Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 >seq3668 Length=32275 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || | || || || |||||||| || || || Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| || || || || ||||| || | | |||||| || |||||| Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||| |||||||||||||| ||||| ||||| | | || ||| Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACT 30721 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||||||||| || || | || |||||||| || ||||| Sbjct 30720 TCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq8700 Length=5779 Score = 102 bits (112), Expect = 2e-16 Identities = 307/469 (65%), Gaps = 10/469 (2%) Strand=Plus/Plus Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270 || || ||||| |||||||| ||||| | | ||| | ||| ||||||| ||||| Sbjct 412 CCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTGCTGTAACATCATCCACATAGCTTCT 471 Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330 || |||||| ||||| |||||||| || |||| || | || || || || | || Sbjct 472 ACGTAGTCCTTAGCATGACCCCAATCACGTTTTGAATCAAGATTACCAAGTTCCAAGAAT 531 Query 268331 TTCTGCTTGCCGAGCT--TCACGCGTGCAAGACCG--CGAGTGATTTTTCGGGTCACGAA 268386 | |||| || | | | | ||| | | ||||||||||| |||||||| Sbjct 532 T----CTTGTTGATTTAATGAAATTTTAGCGACTGATCTGGTGATTTTTCGTGTCACGAA 587 Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCC 268446 |||| || | | || || || || || | || || || || || |||| || Sbjct 588 ATTCTCACCTCTTCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACC 647 Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGG 268506 || || |||||||| || | | ||||||| || ||| || |||||||| || || Sbjct 648 GTAGGCTTCACGGTAATTAATAATGATCCAGTAGCCATACAATTTAGCAACTGCATATGG 707 Query 268507 AGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAG 268566 | | ||||| || || ||| | ||||||| |||| ||||| ||| | | Sbjct 708 ACTTCTTGGATAAAATGGTGTCTTTTCAGTTTGAGGAGTTTCCACAACTTTTCCATACAA 767 Query 268567 CTCGGAGGTCGATGCTTGGTAGAA-CTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTG 268625 || || || |||||||| ||||| || ||| || || | || || ||| || | Sbjct 768 TTCTGATGTTGATGCTTGATAGAATCTAACTTG-TTGATCTAATCCACAAGTTCTAATAG 826 Query 268626 CCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTC 268674 | || | ||||| | |||||| | || ||||| || |||||||| || Sbjct 827 CATCCAATAAACGTAAAGTTCCTACACCGTCCACTTCAGCTGTATATTC 875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921280512650440