Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 149 1e-30
seq3668 143 5e-29
seq8700 102 2e-16
>seq8363
Length=52898
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||||||||| || ||||| || || |||||||| || || || || |||
Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | ||||| ||||| || || ||||| || || | || |||||| || || |||
Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || |||||||| || ||||| || || || ||||| | || || |||
Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| || || || ||||| | ||| |||||||| ||||||||
Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
>seq3668
Length=32275
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | ||||| || | || || || |||||||| || || ||
Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| ||| | |||||||| || || || || ||||| || | | |||||| || ||||||
Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| |||||||| |||||||||||||| ||||| ||||| | | || |||
Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACT 30721
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| ||||||||||| || || | || |||||||| || |||||
Sbjct 30720 TCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674
>seq8700
Length=5779
Score = 102 bits (112), Expect = 2e-16
Identities = 307/469 (65%), Gaps = 10/469 (2%)
Strand=Plus/Plus
Query 268211 CCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCG 268270
|| || ||||| |||||||| ||||| | | ||| | ||| ||||||| |||||
Sbjct 412 CCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTGCTGTAACATCATCCACATAGCTTCT 471
Query 268271 ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCAT 268330
|| |||||| ||||| |||||||| || |||| || | || || || || | ||
Sbjct 472 ACGTAGTCCTTAGCATGACCCCAATCACGTTTTGAATCAAGATTACCAAGTTCCAAGAAT 531
Query 268331 TTCTGCTTGCCGAGCT--TCACGCGTGCAAGACCG--CGAGTGATTTTTCGGGTCACGAA 268386
| |||| || | | | | ||| | | ||||||||||| ||||||||
Sbjct 532 T----CTTGTTGATTTAATGAAATTTTAGCGACTGATCTGGTGATTTTTCGTGTCACGAA 587
Query 268387 CGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACATGCC 268446
|||| || | | || || || || || | || || || || || |||| ||
Sbjct 588 ATTCTCACCTCTTCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACC 647
Query 268447 ATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGG 268506
|| || |||||||| || | | ||||||| || ||| || |||||||| || ||
Sbjct 648 GTAGGCTTCACGGTAATTAATAATGATCCAGTAGCCATACAATTTAGCAACTGCATATGG 707
Query 268507 AGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAAGAG 268566
| | ||||| || || ||| | ||||||| |||| ||||| ||| | |
Sbjct 708 ACTTCTTGGATAAAATGGTGTCTTTTCAGTTTGAGGAGTTTCCACAACTTTTCCATACAA 767
Query 268567 CTCGGAGGTCGATGCTTGGTAGAA-CTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTG 268625
|| || || |||||||| ||||| || ||| || || | || || ||| || |
Sbjct 768 TTCTGATGTTGATGCTTGATAGAATCTAACTTG-TTGATCTAATCCACAAGTTCTAATAG 826
Query 268626 CCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTC 268674
| || | ||||| | |||||| | || ||||| || |||||||| ||
Sbjct 827 CATCCAATAAACGTAAAGTTCCTACACCGTCCACTTCAGCTGTATATTC 875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921280512650440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |