Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3947 95.1 1e-14 >seq3947 Length=2916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 199/294 (68%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230 || ||||| || || | |||| || || ||||| || || || |||| ||| || || Sbjct 1531 AGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCA 1472 Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290 || | | | ||||||||||||| ||| || || || || | || || || ||| Sbjct 1471 GGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTATGATGCGATATTA 1412 Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350 ||||||||||| | |||||| || | || || || || | || || | ||| || Sbjct 1411 AAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAACTCAACTCGCCA 1352 Query 20351 TCAGCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTC 20409 | || |||||||| || || |||| ||||| || ||||| ||||| | | || Sbjct 1351 TTTGCGACATAAAACTGTACCAGACAA-TGACATGGTGGAAGTGCCATTTGTGGAATATC 1293 Query 20410 CGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 | | || ||||| |||| | ||| |||| || ||| | |||||| ||| || Sbjct 1292 CACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGATTTAAT 1239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441209067242680