Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq3947 95.1 1e-14
>seq3947
Length=2916
Score = 95.1 bits (104), Expect = 1e-14
Identities = 199/294 (68%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 20171 AGTGGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCG 20230
|| ||||| || || | |||| || || ||||| || || || |||| ||| || ||
Sbjct 1531 AGAGGCTCAATGTGATTCGTGTAAATATGAGCATCACCAAAAGTATGAACAAAATCGCCA 1472
Query 20231 GGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTA 20290
|| | | | ||||||||||||| ||| || || || || | || || || |||
Sbjct 1471 GGCTTTAAATTTGTAACATGAGCAATCATGTACGTCAATAGAGCGTATGATGCGATATTA 1412
Query 20291 AAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCG 20350
||||||||||| | |||||| || | || || || || | || || | ||| ||
Sbjct 1411 AAAGGAACTCCGAGACCCATATCAGCTGATCTTTGGTATAATTGGCAACTCAACTCGCCA 1352
Query 20351 TCAGCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTC 20409
| || |||||||| || || |||| ||||| || ||||| ||||| | | ||
Sbjct 1351 TTTGCGACATAAAACTGTACCAGACAA-TGACATGGTGGAAGTGCCATTTGTGGAATATC 1293
Query 20410 CGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463
| | || ||||| |||| | ||| |||| || ||| | |||||| ||| ||
Sbjct 1292 CACTGGATTCCAGGCACTTAAAATAATTCGTCGATCATTTGGATTAGATTTAAT 1239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441209067242680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |