Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq7918 170 2e-37 >seq7918 Length=32631 Score = 170 bits (188), Expect = 2e-37 Identities = 293/419 (70%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 135795 CAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCCCTT 135854 ||| || || | |||||| || || || |||||||| | || || || || || ||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 135855 ATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAGAGT 135914 |||||| |||||||| | ||| ||| | || |||||| | || || |||| || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 135915 CGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATGTTT 135974 || || || || || | ||||||||| ||||| || || ||||| || || |||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 135975 CCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CGATCTTAGAT-CCTTCC 136032 | || || ||| ||| |||||| | ||||| ||| ||| | | ||| Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACC--GCCGCGAATGGGGCTGCCTAAG 18272 Query 136033 GCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGATGAT 136091 ||||| ||| |||| || || || || ||||| ||||| ||| | | || || | || Sbjct 18273 GCGCGGATCTTGCCGGCATTAATCCCAATACCGGCACG-TTGAGAGACGTATTTCACAAT 18331 Query 136092 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCAATCACCACACACGA 136151 ||| | || || | |||||| | || || ||| || || | |||||| || Sbjct 18332 GGCACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGA 18391 Query 136152 ACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTT 136210 |||||||| || ||||||||||| ||||| |||||||||||||||||||| || |||| Sbjct 18392 GCTAAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAATTT 18450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525341045851600