Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 181 2e-40
seq8363 127 5e-24
seq3668 116 9e-21
>seq8700
Length=5779
Score = 181 bits (200), Expect = 2e-40
Identities = 283/402 (70%), Gaps = 2/402 (0%)
Strand=Plus/Minus
Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476
||||| || | ||||| |||||||||||||| |||| |||||| || ||||| ||
Sbjct 785 CAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACA 726
Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536
|| |||||||| |||| || || | ||||| || ||||| | || |||||| ||
Sbjct 725 CCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATT 666
Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596
||||||||||| | || ||||||| ||| || |||| || ||||| ||
Sbjct 665 AATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 606
Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656
|| | ||||| | | |||||||| || |||||||| | ||||| || | ||||
Sbjct 605 CCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAA-AATTTC 547
Query 72657 AAT-GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 72715
| | | || ||| | || | || |||||| | ||| | ||| | |||||||| |
Sbjct 546 ATTAAATCAACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCA 487
Query 72716 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 72775
||| ||||| ||||||||||| |||||| ||||| | || || |||| || || ||||
Sbjct 486 TGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTT 427
Query 72776 TGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 72817
||| ||||| ||||| | || || ||||| ||||| ||
Sbjct 426 TGTAATTGCTACAGGAGAGACTCGCAGTGTTCGAGAGTTTGT 385
>seq8363
Length=52898
Score = 127 bits (140), Expect = 5e-24
Identities = 148/197 (75%), Gaps = 12/197 (6%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| || ||||| |||||| | |||||||| || ||||||||||| || || |||
Sbjct 26365 TCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAG 26424
Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|||| || ||||| |||| || |||||||||||||| || ||||| || || ||
Sbjct 26425 ATCAATCGTTGTTG---ATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACA 26481
Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456
||||| || | || |||| || |||||||| || || ||||| || |||| ||
Sbjct 26482 TTTTCAATCGTGTC---CGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTT 26538
Query 288457 TTGACGAATATCTGCAT 288473
|||||||| ||||||||
Sbjct 26539 TTGACGAAGATCTGCAT 26555
>seq3668
Length=32275
Score = 116 bits (128), Expect = 9e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | ||| | || ||| ||||||||||| |||||
Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| |||||||| || |||||||| | ||| |||||| |||
Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||||||||| || ||||| || || || || ||||| |||| || | || |||
Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACT 30721
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| || || || || | || |||||||| || |||||
Sbjct 30720 TCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179205852266006
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |