Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8700 181 2e-40 seq8363 127 5e-24 seq3668 116 9e-21 >seq8700 Length=5779 Score = 181 bits (200), Expect = 2e-40 Identities = 283/402 (70%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 72417 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 72476 ||||| || | ||||| |||||||||||||| |||| |||||| || ||||| || Sbjct 785 CAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACA 726 Query 72477 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 72536 || |||||||| |||| || || | ||||| || ||||| | || |||||| || Sbjct 725 CCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATT 666 Query 72537 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 72596 ||||||||||| | || ||||||| ||| || |||| || ||||| || Sbjct 665 AATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 606 Query 72597 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 72656 || | ||||| | | |||||||| || |||||||| | ||||| || | |||| Sbjct 605 CCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAA-AATTTC 547 Query 72657 AAT-GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 72715 | | | || ||| | || | || |||||| | ||| | ||| | |||||||| | Sbjct 546 ATTAAATCAACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCA 487 Query 72716 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 72775 ||| ||||| ||||||||||| |||||| ||||| | || || |||| || || |||| Sbjct 486 TGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTT 427 Query 72776 TGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 72817 ||| ||||| ||||| | || || ||||| ||||| || Sbjct 426 TGTAATTGCTACAGGAGAGACTCGCAGTGTTCGAGAGTTTGT 385 >seq8363 Length=52898 Score = 127 bits (140), Expect = 5e-24 Identities = 148/197 (75%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || ||||| |||||| | |||||||| || ||||||||||| || || ||| Sbjct 26365 TCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAG 26424 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| || ||||| |||| || |||||||||||||| || ||||| || || || Sbjct 26425 ATCAATCGTTGTTG---ATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACA 26481 Query 288400 TTTTCTATAGAATCGCTCGAT---TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 ||||| || | || |||| || |||||||| || || ||||| || |||| || Sbjct 26482 TTTTCAATCGTGTC---CGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTT 26538 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| |||||||| Sbjct 26539 TTGACGAAGATCTGCAT 26555 >seq3668 Length=32275 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||| | || ||| ||||||||||| ||||| Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| |||||||| || |||||||| | ||| |||||| ||| Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||||||| || ||||| || || || || ||||| |||| || | || ||| Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACT 30721 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| || || || || | || |||||||| || ||||| Sbjct 30720 TCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179205852266006