Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8700 181 2e-40 >seq8700 Length=5779 Score = 181 bits (200), Expect = 2e-40 Identities = 283/402 (70%), Gaps = 2/402 (0%) Strand=Plus/Minus Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465 ||||| || | ||||| |||||||||||||| |||| |||||| || ||||| || Sbjct 785 CAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACA 726 Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525 || |||||||| |||| || || | ||||| || ||||| | || |||||| || Sbjct 725 CCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATT 666 Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585 ||||||||||| | || ||||||| ||| || |||| || ||||| || Sbjct 665 AATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 606 Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645 || | ||||| | | |||||||| || |||||||| | ||||| || | |||| Sbjct 605 CCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAA-AATTTC 547 Query 68646 AAT-GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 68704 | | | || ||| | || | || |||||| | ||| | ||| | |||||||| | Sbjct 546 ATTAAATCAACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCA 487 Query 68705 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 68764 ||| ||||| ||||||||||| |||||| ||||| | || || |||| || || |||| Sbjct 486 TGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTT 427 Query 68765 TGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 68806 ||| ||||| ||||| | || || ||||| ||||| || Sbjct 426 TGTAATTGCTACAGGAGAGACTCGCAGTGTTCGAGAGTTTGT 385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102460644699950