Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 181 2e-40
>seq8700
Length=5779
Score = 181 bits (200), Expect = 2e-40
Identities = 283/402 (70%), Gaps = 2/402 (0%)
Strand=Plus/Minus
Query 68406 CAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATACT 68465
||||| || | ||||| |||||||||||||| |||| |||||| || ||||| ||
Sbjct 785 CAAGCATCAACATCAGAATTGTATGGAAAAGTTGTGGAAACTCCTCAAACTGAAAAGACA 726
Query 68466 CCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAAA 68525
|| |||||||| |||| || || | ||||| || ||||| | || |||||| ||
Sbjct 725 CCATTTTATCCAAGAAGTCCATATGCAGTTGCTAAATTGTATGGCTACTGGATCATTATT 666
Query 68526 AATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAGAGT 68585
||||||||||| | || ||||||| ||| || |||| || ||||| ||
Sbjct 665 AATTACCGTGAAGCCTACGGTATGTATGCATGTAATGGTATTTTATTTAATCATGAATCG 606
Query 68586 CCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGTCGCGAATATTTTC 68645
|| | ||||| | | |||||||| || |||||||| | ||||| || | ||||
Sbjct 605 CCAAGAAGAGGTGAGAATTTCGTGACACGAAAAATCACCAGATCAGTCGCTAA-AATTTC 547
Query 68646 AAT-GGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAAGAGATTGGGGATA 68704
| | | || ||| | || | || |||||| | ||| | ||| | |||||||| |
Sbjct 546 ATTAAATCAACAAGAATTCTTGGAACTTGGTAATCTTGATTCAAAACGTGATTGGGGTCA 487
Query 68705 TGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATACTCCGGATGACTA 68764
||| ||||| ||||||||||| |||||| ||||| | || || |||| || || ||||
Sbjct 486 TGCTAAGGACTACGTAGAAGCTATGTGGATGATGTTACAGCAGGATAAACCAGAAGACTT 427
Query 68765 TGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGT 68806
||| ||||| ||||| | || || ||||| ||||| ||
Sbjct 426 TGTAATTGCTACAGGAGAGACTCGCAGTGTTCGAGAGTTTGT 385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102460644699950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |