Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_010106.1
Length=52975
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 192 2e-44
>seq7918
Length=32631
Score = 192 bits (212), Expect = 2e-44
Identities = 664/1029 (65%), Gaps = 29/1029 (3%)
Strand=Plus/Minus
Query 51926 GTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAA 51985
|| || || || || ||||| |||||||| || || || ||| ||||||||| |||
Sbjct 16035 GTGAATGTAGCCCGTTATGATCAACAGAAATATCCGATTTTTGAGCGGTTAATTGAAAAA 15976
Query 51986 CAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTAT 52045
|| | || || || ||||| || |||||||| || || || | || || || || ||
Sbjct 15975 CAGCTCTCTTTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATCGCATCGACTAC 15916
Query 52046 CAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTT 52105
||| |||||||| | | ||||| || ||||| | || ||||| || || | ||
Sbjct 15915 CAGCAGCTACCTCCTCATGAACAGCATATTTTTATTAGCAATCTAAAATACCAAACCCTG 15856
Query 52106 CTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCT 52165
|| || || ||||| || || | || || | ||| | || | || | ||
Sbjct 15855 CTGGATTCGATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACCCCTGGTCTCACTGCCA 15796
Query 52166 GAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTAT 52225
|| | || || ||||| ||||| ||| | || || || || ||||| || ||||| |||
Sbjct 15795 GAGCTTGAAACCTGGATCGAAACTTGGGCCTTTTCAGAAACCATTCACTCCCGTTCCTAT 15736
Query 52226 ACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGTAACT 52285
|| ||||||||||| |||||||| | || || | |||||| | || ||| |
Sbjct 15735 ACTCACATCATTCGCAATATTGTCAATGATCCTGATGTCATCTTTAAGGATATCATGCTC 15676
Query 52286 AACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACT---CCAG 52342
|| | | ||| | ||| || | | || | || || ||||| || || | ||
Sbjct 15675 AATCAGGAGATCCTGAAACGTGCCAACGATATTGCGCATTACTATGATGAGCTGATCGAG 15616
Query 52343 CAACTC-ACTGCATTATGGCAGTTGTTCGGAGAAGGGAG---CCATGCTGGT-------- 52390
|| || || | ||| |||| ||| || | ||| |||
Sbjct 15615 GCCCTATACAGC----TACCAGCTGTTAGGATTTGGTACGCACCAAATAGGTACTAAAAC 15560
Query 52391 CATGAA-ATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAA 52449
| |||| || || || || |||||||| || ||||| ||| | || | ||| | ||||
Sbjct 15559 CTTGAACATCAGCCTACGGGAGTTGAAAAAAAAGCTCTATCTCTGTTTAATGAGTGTCAA 15500
Query 52450 TGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACG 52509
|| ||||| || || |||||||||||||| ||||| ||||| |||||||| || |||||
Sbjct 15499 TGTCTTGGAGGCCATCCGCTTCTATGTCAGTTTTGCCTGCTCCTTTGCCTTTGCTGAACG 15440
Query 52510 TAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCA 52569
|| |||||||| || ||||||||| | || || ||||| || |||||||| || ||
Sbjct 15439 CAAATTAATGGAGGGCAATGCCAAGTTGATCAAATTGATTGCCCGGGATGAAGCGCTACA 15380
Query 52570 TTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAAT 52629
|| || || ||||| | || | | | || ||| ||||||| |||||
Sbjct 15379 CTTAGTGGGTACCCAGCATCTACTCAGTATCATGGCTGCGGGACAAGATGATAGCGAAAT 15320
Query 52630 GGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAA--ATTGTTCGAAGATGCTGCT 52687
|| || | || || || || ||| | ||| | ||| || ||
Sbjct 15319 GGCGGAGGTAGCACGGGAGTGTCGGGCGGAA--GCTGAAGCCATCTTCATCACGGCGGCG 15262
Query 52688 CAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAAC 52747
||| || || || ||||| | ||| | || ||| ||||| ||||| || | |||
Sbjct 15261 ACACAGGAAAAAGAGTGGGCAGCCTATCTATTTAAATCGGGCTCCATGATCGGTCTCAAC 15202
Query 52748 AAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGA 52807
| ||| |||| ||||||||| || || || || | |||||||| ||||| ||
Sbjct 15201 CGCGAGATTTTATGTCAATATGTGGACTACATTACACATCTGCGTATGCAGGCAGTCGGC 15142
Query 52808 TTAGATGCTCCATTCAAAGGTGCAA----CTAACCCGATTCCGTGGATTAATGCATGGTT 52863
| || | || ||| |||| | |||||| | || ||||| || ||| |
Sbjct 15141 CT-GACACCCCCTTCTTCTCGGCAACGCTCCAACCCGCTGCCTTGGATCAACAGCTGGCT 15083
Query 52864 GAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGG 52923
| ||| ||| || ||||| || || || || ||| | || || || ||||||||
Sbjct 15082 CAGTTCCGATAACGTTCAGGTGGCACCTCAAGAGGTGGAAGTGAGCTCTTATCTGGTCGG 15023
Query 52924 GCAAATTGA 52932
||| || ||
Sbjct 15022 GCAGATCGA 15014
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169338701568738
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |