Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq7918 192 2e-44 >seq7918 Length=32631 Score = 192 bits (212), Expect = 2e-44 Identities = 664/1029 (65%), Gaps = 29/1029 (3%) Strand=Plus/Minus Query 51926 GTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTTAATTGAGAAA 51985 || || || || || ||||| |||||||| || || || ||| ||||||||| ||| Sbjct 16035 GTGAATGTAGCCCGTTATGATCAACAGAAATATCCGATTTTTGAGCGGTTAATTGAAAAA 15976 Query 51986 CAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCGTATTGATTAT 52045 || | || || || ||||| || |||||||| || || || | || || || || || Sbjct 15975 CAGCTCTCTTTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATCGCATCGACTAC 15916 Query 52046 CAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTATCAGATTCTT 52105 ||| |||||||| | | ||||| || ||||| | || ||||| || || | || Sbjct 15915 CAGCAGCTACCTCCTCATGAACAGCATATTTTTATTAGCAATCTAAAATACCAAACCCTG 15856 Query 52106 CTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGTGAGCATTCCT 52165 || || || ||||| || || | || || | ||| | || | || | || Sbjct 15855 CTGGATTCGATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACCCCTGGTCTCACTGCCA 15796 Query 52166 GAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTCACGTTCTTAT 52225 || | || || ||||| ||||| ||| | || || || || ||||| || ||||| ||| Sbjct 15795 GAGCTTGAAACCTGGATCGAAACTTGGGCCTTTTCAGAAACCATTCACTCCCGTTCCTAT 15736 Query 52226 ACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTATCTTTGATGAAATCGTAACT 52285 || ||||||||||| |||||||| | || || | |||||| | || ||| | Sbjct 15735 ACTCACATCATTCGCAATATTGTCAATGATCCTGATGTCATCTTTAAGGATATCATGCTC 15676 Query 52286 AACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACGAACT---CCAG 52342 || | | ||| | ||| || | | || | || || ||||| || || | || Sbjct 15675 AATCAGGAGATCCTGAAACGTGCCAACGATATTGCGCATTACTATGATGAGCTGATCGAG 15616 Query 52343 CAACTC-ACTGCATTATGGCAGTTGTTCGGAGAAGGGAG---CCATGCTGGT-------- 52390 || || || | ||| |||| ||| || | ||| ||| Sbjct 15615 GCCCTATACAGC----TACCAGCTGTTAGGATTTGGTACGCACCAAATAGGTACTAAAAC 15560 Query 52391 CATGAA-ATTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATGTCTATCAA 52449 | |||| || || || || |||||||| || ||||| ||| | || | ||| | |||| Sbjct 15559 CTTGAACATCAGCCTACGGGAGTTGAAAAAAAAGCTCTATCTCTGTTTAATGAGTGTCAA 15500 Query 52450 TGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTCGCAGAACG 52509 || ||||| || || |||||||||||||| ||||| ||||| |||||||| || ||||| Sbjct 15499 TGTCTTGGAGGCCATCCGCTTCTATGTCAGTTTTGCCTGCTCCTTTGCCTTTGCTGAACG 15440 Query 52510 TAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAAGCACTTCA 52569 || |||||||| || ||||||||| | || || ||||| || |||||||| || || Sbjct 15439 CAAATTAATGGAGGGCAATGCCAAGTTGATCAAATTGATTGCCCGGGATGAAGCGCTACA 15380 Query 52570 TTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTGGAAAAGATGACCCAGAAAT 52629 || || || ||||| | || | | | || ||| ||||||| ||||| Sbjct 15379 CTTAGTGGGTACCCAGCATCTACTCAGTATCATGGCTGCGGGACAAGATGATAGCGAAAT 15320 Query 52630 GGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCAGAA--ATTGTTCGAAGATGCTGCT 52687 || || | || || || || ||| | ||| | ||| || || Sbjct 15319 GGCGGAGGTAGCACGGGAGTGTCGGGCGGAA--GCTGAAGCCATCTTCATCACGGCGGCG 15262 Query 52688 CAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGATTGGCTTAAAC 52747 ||| || || || ||||| | ||| | || ||| ||||| ||||| || | ||| Sbjct 15261 ACACAGGAAAAAGAGTGGGCAGCCTATCTATTTAAATCGGGCTCCATGATCGGTCTCAAC 15202 Query 52748 AAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCAAGCAGTTGGA 52807 | ||| |||| ||||||||| || || || || | |||||||| ||||| || Sbjct 15201 CGCGAGATTTTATGTCAATATGTGGACTACATTACACATCTGCGTATGCAGGCAGTCGGC 15142 Query 52808 TTAGATGCTCCATTCAAAGGTGCAA----CTAACCCGATTCCGTGGATTAATGCATGGTT 52863 | || | || ||| |||| | |||||| | || ||||| || ||| | Sbjct 15141 CT-GACACCCCCTTCTTCTCGGCAACGCTCCAACCCGCTGCCTTGGATCAACAGCTGGCT 15083 Query 52864 GAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTACCTGGTCGG 52923 | ||| ||| || ||||| || || || || ||| | || || || |||||||| Sbjct 15082 CAGTTCCGATAACGTTCAGGTGGCACCTCAAGAGGTGGAAGTGAGCTCTTATCTGGTCGG 15023 Query 52924 GCAAATTGA 52932 ||| || || Sbjct 15022 GCAGATCGA 15014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169338701568738