Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5596 152 6e-32 seq10252 95.1 1e-14 seq21622 87.8 2e-12 >seq5596 Length=16775 Score = 152 bits (168), Expect = 6e-32 Identities = 597/930 (64%), Gaps = 18/930 (2%) Strand=Plus/Plus Query 113704 TTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTC 113763 ||||||||| || ||||||||| || ||||| | ||| ||| | ||||| Sbjct 11399 TTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATTTGTGTCTTGACAGATATTTC 11458 Query 113764 CCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGA 113823 ||| || ||| | || | ||| ||||||||||| || || || | ||| ||| || || Sbjct 11459 CCATACTGTTTTATAAATGTTTTTAATATCATCAGGAATTTCATCAATAGCTTGTATTGA 11518 Query 113824 GCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTT 113880 |||| || | || | ||| |||||| || | ||| | |||| | | | Sbjct 11519 GCCATTA---TTTCCAATAATTTGATTCTTCATGTCATCATCCCATAAACCACGTTCTGT 11575 Query 113881 GAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 113940 | ||||| | ||||| | ||| ||||| |||||| || || || | Sbjct 11576 CAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTCCACTAAGCACACGACGATT 11635 Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 ||| | ||| | ||||| || ||||| | |||||| ||||| || || || || || || Sbjct 11636 ATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGA 11695 Query 114001 GGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTT 114059 || || ||||| ||||| | | | || | ||||| ||||| | | | || || Sbjct 11696 TGCAGTTGGCATTGGTGCTAATAACAATGAA-TTACGAAGACCAAAATTCTTGATTTTTT 11754 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTG 114117 | || | || ||||| || | | || || || || | |||||||||| | || Sbjct 11755 CTTTTAATGCTTCCCAATCCCACAAGTCAG-TTGGTGTCTTT-TCCCACATATCATATTG 11812 Query 114118 GAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC 114177 | ||||||| || |||| |||| ||| | ||||| || | || || || Sbjct 11813 TAATATACCTTTTGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGC 11872 Query 114178 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 114237 |||||| |||||| ||| | ||| | | ||| ||||||||||| || | ||| | Sbjct 11873 CAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAA 11932 Query 114238 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 114297 | || || || || || || | | | || ||| ||||| |||| || | || Sbjct 11933 TAATTTAGCTTCATCAGACTCGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCC 11992 Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 114357 ||| | || | || ||||| |||||||| | || || | ||| || || || Sbjct 11993 TTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGG 12052 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 ||| ||||| || |||| |||||| |||| | ||||| | |||||||| ||| | Sbjct 12053 ATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTT 12112 Query 114418 AAGCTTTTCGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474 | || | | ||||| | | ||| | | |||||| || || | ||| || Sbjct 12113 CAATTTATGGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAAT 12169 Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534 ||| || | |||||| |||| ||||| ||| | || | | |||||| ||||| Sbjct 12170 TGATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACA 12229 Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594 |||||||| | || || || | |||| |||||| || || ||||| ||||| Sbjct 12230 TAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATC 12289 Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 ||| || ||||| || || || || ||||| Sbjct 12290 CTTATACAGCATATAAGGTGTTCCTGTCTC 12319 >seq10252 Length=19166 Score = 95.1 bits (104), Expect = 1e-14 Identities = 238/356 (67%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || || ||||||||||||| ||| || ||||||| ||| |||| |||||||||| || Sbjct 14619 CCAGTTCCAATACCTTCGGCGCCATTAACGAGAATCATAGGAATAATTGGCATATAAAAT 14560 Query 171788 TCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGGA 171847 || || ||||| | || ||||||||| |||| | || || || || ||| Sbjct 14559 TCAGGCTCAATTCGTTGATTGTCTTCATCCAAAAAGTTCAACAATGGATCATCATGTGGA 14500 Query 171848 TCAAAGATTTTACGAGCATCCTTGGTG--AGTTTTGTGAAGATGTACCTCG---TTTGAG 171902 | || || ||| || |||| || ||||||||||||| | | || || Sbjct 14499 TGGAAAATAAGACGTGC--TAAGGGTGAAAGCATTGTGAAGATGTAACGAGGACTTGCAG 14442 Query 171903 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGA 171962 | |||||| || || | ||| || ||||| ||||| |||| ||| | ||| | Sbjct 14441 A---ATCTTTTCCGCCTGATAAACGTGTACCAAACTGACCGTTAGGTTGAAGCAAATTAA 14385 Query 171963 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGC-GAGGGAGACT 172021 | || || || | |||| | ||||| || | ||| ||| |||| || || ||| Sbjct 14384 TGTTATTACTTCCAACATAGTTTTGAGCCAAATTAATAATTGTA-CCGCAAAGTGAAACT 14326 Query 172022 TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTT 172077 ||||||||||| || || | | || || ||| | | ||||| ||||| ||||| Sbjct 14325 TCACCGTGATGATATGCACTCATTTCAGCAACAGAACCAGCCAATTGTGCGACCTT 14270 >seq21622 Length=7187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 244/372 (66%), Gaps = 12/372 (3%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| ||||| |||||||| || | ||| ||||| | ||| ||||| || || Sbjct 3502 CGATCGAAGCGCCCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCA 3443 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || || |||| |||| | | ||||| |||||||| || ||| | || || Sbjct 3442 GCAATCACAATAATGCTCCCAGTGCCTTCAAACCCATCCATTTCCACCAACATCTGGTTC 3383 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACC----ACCCGCACTGCGTTGCTTACC 10962 | || || || |||||||||| | || || ||| |||| ||||| || Sbjct 3382 AATGTCTGCTCACGTTCATCAT----GACCACCCCCTAAACCAGCACCTCGTTGACGCCC 3327 Query 10963 GACGGCGTCAATTTCATCGATGAAAACGATACACGGTT--GATTTTCACGGGCAACTTCA 11020 || || ||||| |||||||| |||| || || ||| | |||| | | ||| Sbjct 3326 AACCGCATCAATCTCATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCA 3269 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || ||||| || || | |||||| || || ||||||||||| ||||||| | | || Sbjct 3268 AACATATCCCGCACCCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCG 3209 Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140 ||| | || || || |||| ||||| || || ||| || || |||||||| Sbjct 3208 GAAATGCTAAAAAAAGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTA 3149 Query 11141 CCCGTCCCAGGT 11152 || || || ||| Sbjct 3148 CCGGTGCCGGGT 3137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597132004215160