Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 152 6e-32
seq10252 95.1 1e-14
seq21622 87.8 2e-12
>seq5596
Length=16775
Score = 152 bits (168), Expect = 6e-32
Identities = 597/930 (64%), Gaps = 18/930 (2%)
Strand=Plus/Plus
Query 113704 TTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTC 113763
||||||||| || ||||||||| || ||||| | ||| ||| | |||||
Sbjct 11399 TTGATCGATAAAAGCTCCACGATCAGCTGCCATTTGAATTTGTGTCTTGACAGATATTTC 11458
Query 113764 CCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGA 113823
||| || ||| | || | ||| ||||||||||| || || || | ||| ||| || ||
Sbjct 11459 CCATACTGTTTTATAAATGTTTTTAATATCATCAGGAATTTCATCAATAGCTTGTATTGA 11518
Query 113824 GCCACCCGCCTTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTT 113880
|||| || | || | ||| |||||| || | ||| | |||| | | |
Sbjct 11519 GCCATTA---TTTCCAATAATTTGATTCTTCATGTCATCATCCCATAAACCACGTTCTGT 11575
Query 113881 GAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAG 113940
| ||||| | ||||| | ||| ||||| |||||| || || || |
Sbjct 11576 CAAATCCTTAATAAGATGATGATTAACAACTTGAAACTCTCCACTAAGCACACGACGATT 11635
Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000
||| | ||| | ||||| || ||||| | |||||| ||||| || || || || || ||
Sbjct 11636 ATAAACATTACTTGTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGA 11695
Query 114001 GGCTGTGGGCATGGGTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTT 114059
|| || ||||| ||||| | | | || | ||||| ||||| | | | || ||
Sbjct 11696 TGCAGTTGGCATTGGTGCTAATAACAATGAA-TTACGAAGACCAAAATTCTTGATTTTTT 11754
Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTG 114117
| || | || ||||| || | | || || || || | |||||||||| | ||
Sbjct 11755 CTTTTAATGCTTCCCAATCCCACAAGTCAG-TTGGTGTCTTT-TCCCACATATCATATTG 11812
Query 114118 GAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGC 114177
| ||||||| || |||| |||| ||| | ||||| || | || || ||
Sbjct 11813 TAATATACCTTTTGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGC 11872
Query 114178 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 114237
|||||| |||||| ||| | ||| | | ||| ||||||||||| || | ||| |
Sbjct 11873 CAATTCACAGCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAA 11932
Query 114238 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 114297
| || || || || || || | | | || ||| ||||| |||| || | ||
Sbjct 11933 TAATTTAGCTTCATCAGACTCGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCC 11992
Query 114298 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 114357
||| | || | || ||||| |||||||| | || || | ||| || || ||
Sbjct 11993 TTGAATTCCAATTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGCTTCTTCAACTGG 12052
Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417
||| ||||| || |||| |||||| |||| | ||||| | |||||||| ||| |
Sbjct 12053 ATAGAAATTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTT 12112
Query 114418 AAGCTTTTCGTAATCAAA---ACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGAT 114474
| || | | ||||| | | ||| | | |||||| || || | ||| ||
Sbjct 12113 CAATTTATGGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAAT 12169
Query 114475 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 114534
||| || | |||||| |||| ||||| ||| | || | | |||||| |||||
Sbjct 12170 TGATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACA 12229
Query 114535 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 114594
|||||||| | || || || | |||| |||||| || || ||||| |||||
Sbjct 12230 TAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATC 12289
Query 114595 CTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624
||| || ||||| || || || || |||||
Sbjct 12290 CTTATACAGCATATAAGGTGTTCCTGTCTC 12319
>seq10252
Length=19166
Score = 95.1 bits (104), Expect = 1e-14
Identities = 238/356 (67%), Gaps = 12/356 (3%)
Strand=Plus/Minus
Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787
|| || ||||||||||||| ||| || ||||||| ||| |||| |||||||||| ||
Sbjct 14619 CCAGTTCCAATACCTTCGGCGCCATTAACGAGAATCATAGGAATAATTGGCATATAAAAT 14560
Query 171788 TCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCGGA 171847
|| || ||||| | || ||||||||| |||| | || || || || |||
Sbjct 14559 TCAGGCTCAATTCGTTGATTGTCTTCATCCAAAAAGTTCAACAATGGATCATCATGTGGA 14500
Query 171848 TCAAAGATTTTACGAGCATCCTTGGTG--AGTTTTGTGAAGATGTACCTCG---TTTGAG 171902
| || || ||| || |||| || ||||||||||||| | | || ||
Sbjct 14499 TGGAAAATAAGACGTGC--TAAGGGTGAAAGCATTGTGAAGATGTAACGAGGACTTGCAG 14442
Query 171903 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGA 171962
| |||||| || || | ||| || ||||| ||||| |||| ||| | ||| |
Sbjct 14441 A---ATCTTTTCCGCCTGATAAACGTGTACCAAACTGACCGTTAGGTTGAAGCAAATTAA 14385
Query 171963 TATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGC-GAGGGAGACT 172021
| || || || | |||| | ||||| || | ||| ||| |||| || || |||
Sbjct 14384 TGTTATTACTTCCAACATAGTTTTGAGCCAAATTAATAATTGTA-CCGCAAAGTGAAACT 14326
Query 172022 TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTT 172077
||||||||||| || || | | || || ||| | | ||||| ||||| |||||
Sbjct 14325 TCACCGTGATGATATGCACTCATTTCAGCAACAGAACCAGCCAATTGTGCGACCTT 14270
>seq21622
Length=7187
Score = 87.8 bits (96), Expect = 2e-12
Identities = 244/372 (66%), Gaps = 12/372 (3%)
Strand=Plus/Minus
Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846
||||| ||||| |||||||| || | ||| ||||| | ||| ||||| || ||
Sbjct 3502 CGATCGAAGCGCCCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCA 3443
Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906
|| || |||| |||| | | ||||| |||||||| || ||| | || ||
Sbjct 3442 GCAATCACAATAATGCTCCCAGTGCCTTCAAACCCATCCATTTCCACCAACATCTGGTTC 3383
Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACC----ACCCGCACTGCGTTGCTTACC 10962
| || || || |||||||||| | || || ||| |||| ||||| ||
Sbjct 3382 AATGTCTGCTCACGTTCATCAT----GACCACCCCCTAAACCAGCACCTCGTTGACGCCC 3327
Query 10963 GACGGCGTCAATTTCATCGATGAAAACGATACACGGTT--GATTTTCACGGGCAACTTCA 11020
|| || ||||| |||||||| |||| || || ||| | |||| | | |||
Sbjct 3326 AACCGCATCAATCTCATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCA 3269
Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080
|| ||||| || || | |||||| || || ||||||||||| ||||||| | | ||
Sbjct 3268 AACATATCCCGCACCCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCG 3209
Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140
||| | || || || |||| ||||| || || ||| || || ||||||||
Sbjct 3208 GAAATGCTAAAAAAAGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTA 3149
Query 11141 CCCGTCCCAGGT 11152
|| || || |||
Sbjct 3148 CCGGTGCCGGGT 3137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597132004215160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |