Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq12840 98.7 1e-15 >seq12840 Length=2349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 1812 CTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 1753 Query 57067 TACTACCGAGGATT 57080 |||||||||||||| Sbjct 1752 TACTACCGAGGATT 1739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||| || ||||||||||||| ||||||||||||| Sbjct 918 CTCCCCGGCCGGGAATCGAACCCGGGTCTTCCACGTGACAGGCGGAGATACTCACCACTA 977 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 978 TACTACCGAGGA 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543011288421680