Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5596 158 1e-33 seq8363 86.0 6e-12 >seq5596 Length=16775 Score = 158 bits (174), Expect = 1e-33 Identities = 352/523 (67%), Gaps = 9/523 (2%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || || || || || || |||| ||| || ||| ||||| |||||||| | || Sbjct 12171 GATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACAT 12230 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 ||||| ||| || || || || || || | ||||||||||| || ||||| || Sbjct 12231 AAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCC 12290 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 || |||| || || || || || || || ||||| | ||||||||||| | || || | Sbjct 12291 TTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTG--CAAACCATA 12348 Query 154767 CTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTC-GCTCTCATATTGTTCGTACAGT 154823 || | |||| ||||||| | ||||||| ||| ||| |||||| | || || Sbjct 12349 AATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCTGCT-TCATATCGAATATATAGA 12407 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAAT 154883 |||||||| ||| || || || | | ||| ||||||| | |||||||| || Sbjct 12408 TTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAA 12467 Query 154884 GACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943 ||||||||||| || | || || |||| ||||||||| || || | ||| ||||| || Sbjct 12468 GACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAA 12527 Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003 |||| ||| | || ||||| || | ||| |||||||| | ||| ||| Sbjct 12528 AACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCA 12587 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCT 155060 | | || | ||||| || || ||||| || || | || || ||| || || Sbjct 12588 AAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCA 12647 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACA 155103 |||||||| || | ||| | ||||||||| || | ||||| Sbjct 12648 CCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCAACA 12690 >seq8363 Length=52898 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||||| |||| || || ||||| ||||| ||||| || | ||||| | || || Sbjct 26346 CACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTC 26405 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | || || |||||| | || | || || || || ||||||||||||||||| ||||| Sbjct 26406 TAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTG 26465 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 ||||| ||| ||| || | || || | || ||||| | || | ||||| Sbjct 26466 AATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTT 26525 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| ||||| ||||| || ||||| Sbjct 26526 ACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499459450515880