Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 158 1e-33
seq8363 86.0 6e-12
>seq5596
Length=16775
Score = 158 bits (174), Expect = 1e-33
Identities = 352/523 (67%), Gaps = 9/523 (2%)
Strand=Plus/Plus
Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646
|| || || || || || |||| ||| || ||| ||||| |||||||| | ||
Sbjct 12171 GATGCTAAATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACAT 12230
Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706
||||| ||| || || || || || || | ||||||||||| || ||||| ||
Sbjct 12231 AAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTTACGATTACATGCATCC 12290
Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766
|| |||| || || || || || || || ||||| | ||||||||||| | || || |
Sbjct 12291 TTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTG--CAAACCATA 12348
Query 154767 CTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTC-GCTCTCATATTGTTCGTACAGT 154823
|| | |||| ||||||| | ||||||| ||| ||| |||||| | || ||
Sbjct 12349 AATCTTGTGCCTTTACTTGACGAATAAATCGTCCTTCTGCT-TCATATCGAATATATAGA 12407
Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAAT 154883
|||||||| ||| || || || | | ||| ||||||| | |||||||| ||
Sbjct 12408 TTTTCAAATTCTTTACCATAAGTCTCATAAAGACCTGGACAGCTATGAGGACACATTAAA 12467
Query 154884 GACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943
||||||||||| || | || || |||| ||||||||| || || | ||| ||||| ||
Sbjct 12468 GACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGTCAGGAATCCATAAAGCATAA 12527
Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003
|||| ||| | || ||||| || | ||| |||||||| | ||| |||
Sbjct 12528 AACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTTTCTTTAAATCTAGAAACTCA 12587
Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGT---TTTCCT 155060
| | || | ||||| || || ||||| || || | || || ||| || ||
Sbjct 12588 AAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATGCACCAGGACGTTTATTACCA 12647
Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACA 155103
|||||||| || | ||| | ||||||||| || | |||||
Sbjct 12648 CCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCAACA 12690
>seq8363
Length=52898
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293
||||| |||| || || ||||| ||||| ||||| || | ||||| | || ||
Sbjct 26346 CACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTC 26405
Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353
| || || |||||| | || | || || || || ||||||||||||||||| |||||
Sbjct 26406 TAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTG 26465
Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413
||||| ||| ||| || | || || | || ||||| | || | |||||
Sbjct 26466 AATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTT 26525
Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| ||||| ||||| ||||| || |||||
Sbjct 26526 ACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499459450515880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |