Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5596 181 1e-40 seq3668 127 2e-24 seq8363 122 8e-23 >seq5596 Length=16775 Score = 181 bits (200), Expect = 1e-40 Identities = 927/1464 (63%), Gaps = 27/1464 (2%) Strand=Plus/Minus Query 123225 GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC 123284 || |||| | | ||| || ||||||||||||| | | || | || || || || || Sbjct 12703 GGTCTCGTACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGGT 12644 Query 123285 AA---ACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGAT 123341 || ||| || || | || ||||| | ||||| ||||| | ||||| | || Sbjct 12643 AATAAACGTCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGAG 12584 Query 123342 TTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTAC 123401 ||| || ||||||| || | || |||||| || | ||| |||| || Sbjct 12583 TTTCTAGATTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTAT 12524 Query 123402 GCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTC 123461 ||||||||| | || || |||||||||| ||| || || || | | ||||||| | Sbjct 12523 GCTTTATGGATTCCTGACTTGTTTATGCAACGTGTTGAAAACAATGAAATGTGGTCTTTA 12464 Query 123462 ATGTGTCCCGATCGGTGTCCCGG-CTTGA-GCGACGTTTACGGCAATCAGTTTGACGAGT 123519 |||||||| || | ||||| || ||| | | ||| ||| || || | ||||| | Sbjct 12463 ATGTGTCCTCATAGCTGTCCAGGTCTTTATGAGAC--TTATGGTAAAGAATTTGAAAATC 12406 Query 123520 TGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGT 123579 | || | ||| || ||||| | || |||| || ||||| ||||| | Sbjct 12405 TATATATTCGATATGAAGCAGAAGGACGATTTATTCGTCAAGTAAAGGCACAAGATTTAT 12346 Query 123580 TCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAG 123636 ||| ||||| ||| | ||||| || || ||||| || || ||||| || || | Sbjct 12345 GG---TTTGCAATTATTGAATCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGG 12289 Query 123637 ACGCCTGCAACAGGAAAACCAATCAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTT 123695 | || || || | ||| | ||||| || | ||||| |||||| || ||| | Sbjct 12288 ATGCATGTAATCGTAAATCGAATCAACAGAATCTTGG-AACAATCCGTTGCTCAAATTTA 12230 Query 123696 TGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCG 123755 || | |||||| || |||| | ||| |||| || || |||||||| || || Sbjct 12229 TGTACTGAAATTGTCCAATATTCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCA 12170 Query 123756 ATTTGCGTGAATCGTTGCGTCGA----AAACGGC--GCTTTTAATTTCCAAACGCTCAAA 123809 ||| | | ||| | ||| | || || | | | ||||||| | | || Sbjct 12169 ATTGCCTTAAATATGTTTGTCAAGCCAAATCGTAAAGAATATGATTTCCATAAATTGAAG 12110 Query 123810 CGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCT 123869 | ||||| | || || ||||| || |||||||| || |||||||| ||||| Sbjct 12109 GAAGTCACAAAGATAGTCACAAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCA 12050 Query 123870 TTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGG 123929 | || ||||| || || || | ||| | || ||||| | || |||||||| Sbjct 12049 GTTGAAGAAGCTAAACGATCAAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGA 11990 Query 123930 TTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT 123989 || || || || ||| || || || | ||||| ||||| || ||||| || || | Sbjct 11989 TTAGCTGATGCCTTTATATTGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTA 11930 Query 123990 AATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCG 124049 ||| |||||| || ||||||||||| || ||||| ||| ||||||| ||| | || Sbjct 11929 AATCAACAAATATTTGAGACAATTTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCT 11870 Query 124050 AAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAG 124109 ||| | || | || || | || | || | || | |||||| || || Sbjct 11869 GAAAAACTTGGAACTTATGAGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACAA 11810 Query 124110 TACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGC 124169 || || |||||| | ||||| || | |||||||| ||| | |||||| || Sbjct 11809 TATGATATGTGGGAAAAGACACCAACTGACTTGTGGGATTGGGAAGCATTAAAAGAAAAA 11750 Query 124170 ATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACT 124229 || || ||| | ||||| || |||| | || ||||| || ||| | || Sbjct 11749 ATCAAGAATTTTGGTCTTCGTAATTCATTGTTATTAGCACCAATGCCAACTGCATCAACA 11690 Query 124230 GCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGA 124289 ||||| |||||||| || || || || || |||| ||| | ||| | || || Sbjct 11689 GCTCAGATTTTAGGTAATAATGAGAGTTTTGAACCGTACACAAGTAATGTTTATAATCGT 11630 Query 124290 CGAGTG-TTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGG- 124347 || ||| |||| || || |||||||| | ||||||||| | | | || ||| | Sbjct 11629 CGTGTGCTTAG-TGGAGAGTTTCAAGTTGTTAATCATCATCTTATTAAGGATTTGACAGA 11571 Query 124348 -CGTTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTG 124406 ||| ||| | ||||| ||||| || ||||||||| |||| | Sbjct 11570 ACGT--GGTTTATGGGATGATGACATGAAGAATCAAATTATTGGAAATAATGGCTCAATA 11513 Query 124407 CAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATG 124466 || || | | ||||| || | | || | | || ||||| || |||||||| Sbjct 11512 CAAGCTATTGATGAAATTCCTGATGATATTAAAAACATTTATAAAACAGTATGGGAAATA 11453 Query 124467 AAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAA 124526 || | |||| ||||||| | || || || || | | |||||||||||| Sbjct 11452 TCTGTCAAGACACAAATTCAAATGGCAGCTGATCGTGGAGCTTTTATCGATCAAAGTCAA 11393 Query 124527 TCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCAC 124586 || || || | |||||||||||| | || | |||| || || | | Sbjct 11392 TCATTCAATATTCATGTAGCGGAACCAAATTATGGGAAATTGACATCTATTCATTTTTAT 11333 Query 124587 GCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646 | |||| ||||| ||||| || ||||||||||||||||| ||| | || || || Sbjct 11332 GGATGGAAGTTGGGACTTAAAACTGGAATGTATTACTTAAGAACAAAAGCTGCTGCGAAT 11273 Query 124647 GCCATTCAATTTACCGTCGACAAA 124670 || ||||||||||| || || ||| Sbjct 11272 GCTATTCAATTTACTGTTGATAAA 11249 >seq3668 Length=32275 Score = 127 bits (140), Expect = 2e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||||| |||||||||||||||||||| || || || | || ||| |||||||| Sbjct 30877 ATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTG 30818 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| || ||| | || || ||||| || || || ||||| |||||||| ||||| || || Sbjct 30817 TTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 30758 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 | |||| ||| | ||||| |||| ||| ||||| | ||| | ||||| || || Sbjct 30757 TGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGT 30698 Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || || ||||||||| Sbjct 30697 TAATGTTTTGACGAAGATTTGCATC 30673 >seq8363 Length=52898 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | |||||||| || || ||||| || || || ||||| || ||||| Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || |||||||| || || | ||||||||||| || || || ||| Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || |||||||||||||||||||| || | ||| | ||||| || | ||||||| Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| || || || || | ||||| || || || ||||| Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451835523762920