Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 181 1e-40
seq3668 127 2e-24
seq8363 122 8e-23
>seq5596
Length=16775
Score = 181 bits (200), Expect = 1e-40
Identities = 927/1464 (63%), Gaps = 27/1464 (2%)
Strand=Plus/Minus
Query 123225 GGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC 123284
|| |||| | | ||| || ||||||||||||| | | || | || || || || ||
Sbjct 12703 GGTCTCGTACCTATGTTGAGAGTTTACAATAATACAGCACGTTATGTTGATCAAGGTGGT 12644
Query 123285 AA---ACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGAT 123341
|| ||| || || | || ||||| | ||||| ||||| | ||||| | ||
Sbjct 12643 AATAAACGTCCTGGTGCATTTGCAGTCTATTTGGAACCTTGGCATGGAGATGTTTTTGAG 12584
Query 123342 TTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTAC 123401
||| || ||||||| || | || |||||| || | ||| |||| ||
Sbjct 12583 TTTCTAGATTTAAAGAAAAATACTGGAAAAGAAGAAGTTCGTGCTAGAGATATGTTTTAT 12524
Query 123402 GCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTC 123461
||||||||| | || || |||||||||| ||| || || || | | ||||||| |
Sbjct 12523 GCTTTATGGATTCCTGACTTGTTTATGCAACGTGTTGAAAACAATGAAATGTGGTCTTTA 12464
Query 123462 ATGTGTCCCGATCGGTGTCCCGG-CTTGA-GCGACGTTTACGGCAATCAGTTTGACGAGT 123519
|||||||| || | ||||| || ||| | | ||| ||| || || | ||||| |
Sbjct 12463 ATGTGTCCTCATAGCTGTCCAGGTCTTTATGAGAC--TTATGGTAAAGAATTTGAAAATC 12406
Query 123520 TGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGT 123579
| || | ||| || ||||| | || |||| || ||||| ||||| |
Sbjct 12405 TATATATTCGATATGAAGCAGAAGGACGATTTATTCGTCAAGTAAAGGCACAAGATTTAT 12346
Query 123580 TCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAG 123636
||| ||||| ||| | ||||| || || ||||| || || ||||| || || |
Sbjct 12345 GG---TTTGCAATTATTGAATCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGG 12289
Query 123637 ACGCCTGCAACAGGAAAACCAATCAG-AGCAACTTGGGAACAATAAAATGTAGTAATCTT 123695
| || || || | ||| | ||||| || | ||||| |||||| || ||| |
Sbjct 12288 ATGCATGTAATCGTAAATCGAATCAACAGAATCTTGG-AACAATCCGTTGCTCAAATTTA 12230
Query 123696 TGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCG 123755
|| | |||||| || |||| | ||| |||| || || |||||||| || ||
Sbjct 12229 TGTACTGAAATTGTCCAATATTCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCA 12170
Query 123756 ATTTGCGTGAATCGTTGCGTCGA----AAACGGC--GCTTTTAATTTCCAAACGCTCAAA 123809
||| | | ||| | ||| | || || | | | ||||||| | | ||
Sbjct 12169 ATTGCCTTAAATATGTTTGTCAAGCCAAATCGTAAAGAATATGATTTCCATAAATTGAAG 12110
Query 123810 CGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCT 123869
| ||||| | || || ||||| || |||||||| || |||||||| |||||
Sbjct 12109 GAAGTCACAAAGATAGTCACAAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCA 12050
Query 123870 TTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGG 123929
| || ||||| || || || | ||| | || ||||| | || ||||||||
Sbjct 12049 GTTGAAGAAGCTAAACGATCAAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGA 11990
Query 123930 TTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT 123989
|| || || || ||| || || || | ||||| ||||| || ||||| || || |
Sbjct 11989 TTAGCTGATGCCTTTATATTGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTA 11930
Query 123990 AATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCG 124049
||| |||||| || ||||||||||| || ||||| ||| ||||||| ||| | ||
Sbjct 11929 AATCAACAAATATTTGAGACAATTTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCT 11870
Query 124050 AAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAG 124109
||| | || | || || | || | || | || | |||||| || ||
Sbjct 11869 GAAAAACTTGGAACTTATGAGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACAA 11810
Query 124110 TACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGC 124169
|| || |||||| | ||||| || | |||||||| ||| | |||||| ||
Sbjct 11809 TATGATATGTGGGAAAAGACACCAACTGACTTGTGGGATTGGGAAGCATTAAAAGAAAAA 11750
Query 124170 ATATCGACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACT 124229
|| || ||| | ||||| || |||| | || ||||| || ||| | ||
Sbjct 11749 ATCAAGAATTTTGGTCTTCGTAATTCATTGTTATTAGCACCAATGCCAACTGCATCAACA 11690
Query 124230 GCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGA 124289
||||| |||||||| || || || || || |||| ||| | ||| | || ||
Sbjct 11689 GCTCAGATTTTAGGTAATAATGAGAGTTTTGAACCGTACACAAGTAATGTTTATAATCGT 11630
Query 124290 CGAGTG-TTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGG- 124347
|| ||| |||| || || |||||||| | ||||||||| | | | || ||| |
Sbjct 11629 CGTGTGCTTAG-TGGAGAGTTTCAAGTTGTTAATCATCATCTTATTAAGGATTTGACAGA 11571
Query 124348 -CGTTAAATTTGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTG 124406
||| ||| | ||||| ||||| || ||||||||| |||| |
Sbjct 11570 ACGT--GGTTTATGGGATGATGACATGAAGAATCAAATTATTGGAAATAATGGCTCAATA 11513
Query 124407 CAGCGCATCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATG 124466
|| || | | ||||| || | | || | | || ||||| || ||||||||
Sbjct 11512 CAAGCTATTGATGAAATTCCTGATGATATTAAAAACATTTATAAAACAGTATGGGAAATA 11453
Query 124467 AAAAATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAA 124526
|| | |||| ||||||| | || || || || | | ||||||||||||
Sbjct 11452 TCTGTCAAGACACAAATTCAAATGGCAGCTGATCGTGGAGCTTTTATCGATCAAAGTCAA 11393
Query 124527 TCTTTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCAC 124586
|| || || | |||||||||||| | || | |||| || || | |
Sbjct 11392 TCATTCAATATTCATGTAGCGGAACCAAATTATGGGAAATTGACATCTATTCATTTTTAT 11333
Query 124587 GCGTGGAGCAGCGGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGAT 124646
| |||| ||||| ||||| || ||||||||||||||||| ||| | || || ||
Sbjct 11332 GGATGGAAGTTGGGACTTAAAACTGGAATGTATTACTTAAGAACAAAAGCTGCTGCGAAT 11273
Query 124647 GCCATTCAATTTACCGTCGACAAA 124670
|| ||||||||||| || || |||
Sbjct 11272 GCTATTCAATTTACTGTTGATAAA 11249
>seq3668
Length=32275
Score = 127 bits (140), Expect = 2e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196
||||| |||||||||||||||||||| || || || | || ||| ||||||||
Sbjct 30877 ATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTG 30818
Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256
||| || ||| | || || ||||| || || || ||||| |||||||| ||||| || ||
Sbjct 30817 TTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTT 30758
Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
| |||| ||| | ||||| |||| ||| ||||| | ||| | ||||| || ||
Sbjct 30757 TGCCTTGACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGT 30698
Query 45317 TAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || || |||||||||
Sbjct 30697 TAATGTTTTGACGAAGATTTGCATC 30673
>seq8363
Length=52898
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || | |||||||| || || ||||| || || || ||||| || |||||
Sbjct 26329 CCACCTCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTC 26388
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || |||||||| || || | ||||||||||| || || || |||
Sbjct 26389 AATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGA 26448
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| |||||||||||||||||||| || | ||| | ||||| || | |||||||
Sbjct 26449 ATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACT 26508
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| |||| || || || || | ||||| || || || |||||
Sbjct 26509 TCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCAT 26555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451835523762920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |