Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq7918 170 2e-37 >seq7918 Length=32631 Score = 170 bits (188), Expect = 2e-37 Identities = 293/419 (70%), Gaps = 6/419 (1%) Strand=Plus/Plus Query 139681 CAGGTTATTAATCTGTACGCCGTAATCAAGATGACGAATGCGGTTATCTTCCACCCCCTT 139740 ||| || || | |||||| || ||||| ||||| || | || || || || || ||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 139741 ATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCATATTGGGTAATAGAGAGT 139800 |||||| |||||||| | ||| ||| | || |||||||| || || |||| || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 139801 CGCCGCCCCGCCACGAATGCCGCCTTGTGAGCATGACTTAACGGCCGTCTGAAAATGTTT 139860 || || || || || | |||||||| ||||| || || ||||| || || |||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 139861 CCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCC-CGATCTTAGAT-CCTTCC 139918 | || || ||| ||| |||||| | ||||| ||| ||| | | ||| Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACC--GCCGCGAATGGGGCTGCCTAAG 18272 Query 139919 GCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTA-ATATACTTGATGAT 139977 ||||| ||| |||| || || || || ||||| ||||| ||| | | || || | || Sbjct 18273 GCGCGGATCTTGCCGGCATTAATCCCAATACCGGCACG-TTGAGAGACGTATTTCACAAT 18331 Query 139978 TGCATTTGCTGTTTCGTTGATGCCCTGCAATGAGTCATCACTTTCGATCACCACACACGA 140037 ||| | || || | |||||| | || || ||| ||||| | |||||| || Sbjct 18332 GGCACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGA 18391 Query 140038 ACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGTAGAGAGATTT 140096 |||||||| || ||||||||||| ||||| ||||||||||||||||| || || |||| Sbjct 18392 GCTAAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAATTT 18450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532212096003760