Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq7918 129 6e-25 >seq7918 Length=32631 Score = 129 bits (142), Expect = 6e-25 Identities = 279/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 142995 CAGGTCGTTTAACTGGATTCCGTAGTCCATATGACGAATACGGTTTTCATCGACACCTTT 143054 ||| | ||| | ||| | || || |||| ||| || | || ||||| || || || Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 143055 GTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGT 143114 |||||||| | || | ||| ||| ||||| |||||| | ||||| | || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 143115 AGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTT 143174 ||| || || || || | || ||||| || || ||||| || || || ||||||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 143175 CCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCAATACGAGAACCTTCAGC 143234 | || |||||| || ||||| | | ||||| || ||| | ||| || Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGC 18274 Query 143235 ACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAAATGTATTCAATTATTGA 143294 || ||| | || | ||||| |||||||| ||||||| ||| | ||||| | || | Sbjct 18275 GCGGATCTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGC 18334 Query 143295 GTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGC---TTCAATAACAACACAAGA 143351 | || || || || || | | | | |||| || || | |||||||| Sbjct 18335 ACTGGCGGTGGCATTGATGGAGT---CTAAACTATCTGCACACTCGATTAACACACAAGA 18391 Query 143352 ACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTAGGCAACGAAA 143407 ||||||||||||||||| ||||| |||| |||||||| |||||||||| ||||| Sbjct 18392 GCTAAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAA 18447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548311721430120