Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq10252 89.7 6e-13 >seq10252 Length=19166 Score = 89.7 bits (98), Expect = 6e-13 Identities = 237/356 (67%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || || ||||||||||||| ||| || ||||||| ||| |||| |||||||||| || Sbjct 14619 CCAGTTCCAATACCTTCGGCGCCATTAACGAGAATCATAGGAATAATTGGCATATAAAAT 14560 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 || || ||||| | || || |||||| |||| | || || ||||| ||| Sbjct 14559 TCAGGCTCAATTCGTTGATTGTCTTCATCCAAAAAGTTCAACAATGGATCATCATGTGGA 14500 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTG--AGTTTTGTGAAGATGTACCTCG---TTTGAG 175922 | || || ||| || |||| || ||||||||||||| | | || || Sbjct 14499 TGGAAAATAAGACGTGC--TAAGGGTGAAAGCATTGTGAAGATGTAACGAGGACTTGCAG 14442 Query 175923 ACGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGA 175982 | |||||| || || | ||| || ||||| ||||| || | ||| | ||| | Sbjct 14441 A---ATCTTTTCCGCCTGATAAACGTGTACCAAACTGACCGTTAGGTTGAAGCAAATTAA 14385 Query 175983 TATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGC-GAGGGAGACT 176041 | || || || | ||||| | ||||| || | ||| ||| |||| || || ||| Sbjct 14384 TGTTATTACTTCCAACATAGTTTTGAGCCAAATTAATAATTGTA-CCGCAAAGTGAAACT 14326 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTT 176097 ||||||||||| || || | | || || ||| | | ||||| || || ||||| Sbjct 14325 TCACCGTGATGATATGCACTCATTTCAGCAACAGAACCAGCCAATTGTGCGACCTT 14270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613279611835320