Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3668 111 4e-19 seq8363 84.2 5e-11 >seq3668 Length=32275 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||||| ||||||||| ||| || | ||||||||||| || || || Sbjct 30870 GTTGATTCCTTTTGGATATTGTAGTCACTCAATGTACGTCCATCTTCCAATTGTTTACCA 30811 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| | ||| || || || || |||||||||| || || |||||| ||| Sbjct 30810 GCGAAGATTAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGGATCTTTGCCTTG 30751 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| ||||| | | || || ||||| ||||| || ||||| || | ||| Sbjct 30750 ACATTTTCGATAGTGTCAGAAGGCTCAACTTCCAAAGTGATGGTTTTACCAGTTAATGTT 30691 Query 199613 TTCACAAAAATTTG 199626 || || || ||||| Sbjct 30690 TTGACGAAGATTTG 30677 >seq8363 Length=52898 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | ||| || || ||||| || || | |||||||| ||| || Sbjct 26334 TCGAAGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGT 26393 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||| || | || || ||||| ||||| | || || || || ||| |||||| Sbjct 26394 GCGTCCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCC 26453 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| || ||||| || ||| || ||| | ||||| | || || || || | Sbjct 26454 TTCTTTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAG 26513 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||||||||| | ||||| || || || || Sbjct 26514 GGTAATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTG 26552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178473330903359