Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq3668 111 1e-19 seq8363 89.7 4e-13 >seq3668 Length=32275 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||||||||| || ||| ||||| ||||| || || | Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || | || |||||||| || ||||| | || Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||||||||| | || ||| | || ||| || ||||| | || | Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATA--GTGTCAGAAGGCTCAA 30723 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct 30722 CTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674 >seq8363 Length=52898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| || ||| ||| |||| |||| || |||||||| ||| |||| Sbjct 26365 TCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAG 26424 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || || || || ||||| | || | |||||||| || ||||| |||| | Sbjct 26425 ATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTT 26484 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | || || || | |||||||| |||||||| || ||||| ||| Sbjct 26485 TCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACG 26544 Query 39709 AAGATCTGCATG 39720 |||||||||||| Sbjct 26545 AAGATCTGCATG 26556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347243960432141