Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq3668 111 1e-19
seq8363 89.7 4e-13
>seq3668
Length=32275
Score = 111 bits (122), Expect = 1e-19
Identities = 163/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || ||||||||||| || ||| ||||| ||||| || || |
Sbjct 30900 CCACCACGAAGACGAAGAACCAAATGCAATGTTGATTCCTTTTGGATATTGTAGTCACTC 30841
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
|| ||| |||| ||||||||||| || | || |||||||| || ||||| | ||
Sbjct 30840 AATGTACGTCCATCTTCCAATTGTTTACCAGCGAAGATTAAACGTTGTTGATCTGGTGGA 30781
Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| ||||||||||| | || ||| | || ||| || ||||| | || |
Sbjct 30780 ATTCCTTCTTTGTCTTGGATCTTTGCCTTGACATTTTCGATA--GTGTCAGAAGGCTCAA 30723
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| || |||||||| ||||| ||||| |||||||| |||||
Sbjct 30722 CTTCCAAAGTGATGGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 30674
>seq8363
Length=52898
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
||||| || ||||| || ||| ||| |||| |||| || |||||||| ||| ||||
Sbjct 26365 TCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCATCCTCTAATTGTTTACCGGCAAAG 26424
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| || || || ||||| | || | |||||||| || ||||| |||| |
Sbjct 26425 ATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTATCTTGAATTTTAGCCTTAACATTT 26484
Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708
| | ||||| | || || || | |||||||| |||||||| || ||||| |||
Sbjct 26485 TCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATTGTCTTACCCGTCAAGGTTTTGACG 26544
Query 39709 AAGATCTGCATG 39720
||||||||||||
Sbjct 26545 AAGATCTGCATG 26556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347243960432141
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |