Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq7918 172 6e-38 >seq7918 Length=32631 Score = 172 bits (190), Expect = 6e-38 Identities = 288/415 (69%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 41133 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 41192 |||| | || | ||||| || |||||||||||||| ||||| || || ||||| || Sbjct 18452 TAAAATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAG 18393 Query 41193 CAGTTGTGTTGTAATCGAATCTGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC-- 41250 | |||||| ||||||| | || ||| | | | || | || || || || Sbjct 18392 CTCTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAA---TGCCACCGCCAG 18336 Query 41251 -GCGATCGTGAAATATATCTCTCAACGTGCGGGTATCGGTGTCAACGCCGGACACATTCG 41309 || || |||||||| ||||||||||||| ||||| || | || ||||| | || || Sbjct 18335 TGCCATTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCG 18276 Query 41310 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTCCATACAGGCGTTATCCCGTTCTG 41369 ||| | || || || || ||||| || | ||||| ||| ||| || || | Sbjct 18275 CGCCTTAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTA 18216 Query 41370 GAAACACATTCAGACGGCGGTTAAATCTTGTTCCCAGGGTGGCGTTCGTGGTGGTGCAGC 41429 ||||| | || || || || ||||| || ||||| || || || || || || || || Sbjct 18215 CAAACATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGC 18156 Query 41430 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGCTGGTTCTGAAAAATAA 41489 ||||| | |||||| | ||||||| ||||| ||| |||| | || | ||||| || Sbjct 18155 TACCCTCTTCTATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAA 18096 Query 41490 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGACTATGGCGTACAGCTTAAC 41544 || |||||||| ||||| || | || || ||||| ||||| |||||||| ||| Sbjct 18095 TCGGGGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAAC 18041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565383785984160