Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq7918 138 2e-27 seq20099 86.0 9e-12 >seq7918 Length=32631 Score = 138 bits (152), Expect = 2e-27 Identities = 266/390 (68%), Gaps = 2/390 (1%) Strand=Plus/Plus Query 129079 CCGTAGTCAAGATGTCGGATTCGGTTTTCTTCAACGCCCTTGTTATTCTTGAGCACAAGG 129138 || || || ||||| || | || ||||| ||||||||| || || || | ||| | Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113 Query 129139 ATTTTTTCAACTTCGAGGTGCCACATTGGGTAATATAGAGTTGCGGCACCGCCGCGAACA 129198 | ||| |||||| | ||||| | || || | || || ||||| || ||||| ||| Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173 Query 129199 CCACCCTGTGAACAGCTCTTTACCGCAGTCTGGAAGTATTTCCAAAATGGGATAATACCG 129258 || || || || || || || || || ||||| | ||| |||| || ||| ||| Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATACAGCCG 18233 Query 129259 GTATGTCGCACTTCACCGCTACGAATGCGAGATCCCTC-GGCACGAATCGCACCGCCGTT 129317 ||||| | ||||||| |||||| | | | ||| ||| || ||| ||| | || Sbjct 18234 GTATGAAAGGCCTCACCGCCGCGAATGGG-GCTGCCTAAGGCGCGGATCTTGCCGGCATT 18292 Query 129318 GATGCCGATACCAGCGCGTTTGCTGATATAGTCAACGATAGAACTAGCGGTAGCGTTGAT 129377 || || ||||| || |||| || || | || || | ||| ||||| || ||||| Sbjct 18293 AATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCATTGAT 18352 Query 129378 GCTATCCAGTTCGTCTCCACATTCGATCTTGACACAAGAGCTAAACTGCCGAGTCGGGGT 129437 | || | ||| |||| ||||| |||||||||||||| || || || ||||| Sbjct 18353 GGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGGGT 18412 Query 129438 GCGAACACCTGCGAGAATCGGAGTTGGCAG 129467 |||||||| || | ||||||||| ||||| Sbjct 18413 ACGAACACCCGCCATAATCGGAGTAGGCAG 18442 Score = 91.5 bits (100), Expect = 2e-13 Identities = 325/495 (66%), Gaps = 30/495 (6%) Strand=Plus/Plus Query 127079 TTCATCACGCGCAATCAGTTTCATGATCTTAGCGTTGCCTTCCATCAAACCGCGTTCGGC 127138 |||||| || ||||||| ||| || | ||| || ||||| ||||| || |||||| || Sbjct 15388 TTCATCCCGGGCAATCAATTTGATCAACTTGGCATTGCCCTCCATTAATTTGCGTTCAGC 15447 Query 127139 AAACGAGAAGGTGCAGGCGAAGCTTACATAAAAACGAATCGCTTCCAAAGCGTTTACCGC 127198 ||| | |||| |||||| || || ||||| || || || || ||||| | || || Sbjct 15448 AAAGGCAAAGGAGCAGGCAAAACTGACATAGAAGCGGATGGCCTCCAAGACATTGACAC- 15506 Query 127199 GTGTTTGGCGAGATACAGAGCTTCTTTT---ACTT---TAGTCAGTTGTTGAAC-TTGCA 127251 | || ||| | ||||||| |||| ||| ||| | | |||| || || | Sbjct 15507 -TCATTAAACAGAGATAGAGCTTTTTTTTCAACTCCCGTAGGCTGATGTTCAAGGTTTTA 15565 Query 127252 G-ACC-AGCCGG-GAATACTTGACAGCACAACATATCATAGGTGCGTTT---CTCGCGAA 127305 | ||| | || | ||| | | | |||| | ||| || | |||| | Sbjct 15566 GTACCTATTTGGTGCGTACC--AAATCCTAACAGCTGGTAGCTGTATAGGGCCTCG---A 15620 Query 127306 TCAGATCGTCGTAATACTGAGTCACGGCAGTGGCGCGTTTCATGATCTTTTCATCGAGCA 127365 |||| || || || || || | | | |||| ||||||| ||||| | || ||||| Sbjct 15621 TCAGCTCATCATAGTAATGCGCAATATCGTTGGCACGTTTCAGGATCTCCTGATTGAGCA 15680 Query 127366 TGATCCTATCAAACA---CTTCGGTCGGATTCACATACAGATTCCGCATGATGTGAGTAT 127422 |||| | ||| | | || | ||| ||| | ||| || ||||||||||||| Sbjct 15681 TGATATCCTTAAAGATGACATCAGGATCATTGACA---ATATTGCGAATGATGTGAGTAT 15737 Query 127423 ACGAACGGCTGTGAATCGTTTCACTAAAGCTCCAAGTAGTGATCCAAGTCTCCAGCGCGA 127482 | |||||| |||||| ||||| |||| |||||| |||||| || || ||| | Sbjct 15738 AGGAACGGGAGTGAATGGTTTCTGAAAAGGCCCAAGTTTCGATCCAGGTTTCAAGCTC-- 15795 Query 127483 TGTC--TGACACCATTGGCAAGAAAGTCAAGTTAGGTGCGCGACCCTGAACAGAATCAAG 127540 || | ||| |||| || || |||| | ||||| ||| || |||| ||||| || Sbjct 15796 TGGCAGTGAGACCAGGGGTAAAAAAGCGACATTAGGGCTGCGCCCTTGAATCGAATCCAG 15855 Query 127541 CAGACTTTGATATTT 127555 ||| |||| ||||| Sbjct 15856 CAGGGTTTGGTATTT 15870 >seq20099 Length=4024 Score = 86.0 bits (94), Expect = 9e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| | ||||| || |||||||| |||||| |||||||| |||||| |||||||||| Sbjct 1689 TGGTGGGTCGTGAAGGGCTCGAACCTTCGACCTACGGATTAAGAGTCCGCTGCTCTACCA 1748 Query 191922 ACTAAGCTAACG 191933 ||| |||||||| Sbjct 1749 ACTGAGCTAACG 1760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720462236345760