Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq7918 132 5e-26 >seq7918 Length=32631 Score = 132 bits (146), Expect = 5e-26 Identities = 271/400 (68%), Gaps = 2/400 (1%) Strand=Plus/Plus Query 141468 CCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAACACAATC 141527 |||||||||| || || | || ||||| ||||| || ||||| || ||||| | | Sbjct 18054 CCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAACACTAAC 18113 Query 141528 AAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGAACCTTTACGAATA 141587 | | ||| ||||| | ||||| | || |||| | || || | || || | | Sbjct 18114 AGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCGCGCACA 18173 Query 141588 CCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAAAGGTACTAC-GCC 141646 || ||||| || || | | || |||| | || || || | ||||| | ||| ||| Sbjct 18174 CCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAA-TACAGCC 18232 Query 141647 AGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAATCATGCCTGCGTT 141706 || || | | || || || ||| ||| || || ||| |||| || || Sbjct 18233 GGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCGGCATT 18292 Query 141707 AATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGTTTGCATCATTGAT 141766 |||||| ||||| || || | ||| || || || ||||| ||| | | ||||||| Sbjct 18293 AATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCATTGAT 18352 Query 141767 TGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATTGACGAGTTGGGGT 141826 ||||| | || || || | || || | ||||| || || |||||||| |||||||| Sbjct 18353 GGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGGGT 18412 Query 141827 ACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTA 141866 ||||||||| |||||||| |||||||||| ||| |||||| Sbjct 18413 ACGAACACCCGCCATAATCGGAGTAGGCAGCGAAATTTTA 18452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524774855964760