Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5596 156 5e-33 seq29385 107 2e-18 seq21622 93.3 5e-14 seq10252 87.8 2e-12 >seq5596 Length=16775 Score = 156 bits (172), Expect = 5e-33 Identities = 609/945 (64%), Gaps = 18/945 (2%) Strand=Plus/Minus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 |||||| ||||| || ||||| |||||||| || || || || ||||| | || Sbjct 12328 TCTCAAGTTGAGACAGGAACACCTTATATGCTGTATAAGGATGCATGTAATCGTAAATCG 12269 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 |||||| ||||| | || ||| | || || | ||||| ||||| | ||| | Sbjct 12268 AATCAACAGAATCTTGGAACAATCCGTTGCTCAAATTTATGTACTGAAATTGTCCAATAT 12209 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 || |||||||| ||||| ||||| | |||||||| || | | || ||| Sbjct 12208 TCAAGTAAAGATGAAGTTGCTGTCTGTAATTTAGCATCAATTGCCTTAAATATGTTTGTC 12149 Query 112476 GATCCAGAGAC-AAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 112534 | ||| | ||||| || ||||| | ||| | | ||||| || || | ||||| Sbjct 12148 AAGCCAAATCGTAAAGA-ATATGATTTCCATAAATTGAAGGAAGTCACAAAGATAGTCAC 12090 Query 112535 AAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATC 112594 || ||| |||| | | ||||||| ||||| || || ||||| ||| ||| Sbjct 12089 AAGAAATTTAAATAAAATTATTGAAGTTAATTTCTATCCAGTTGAAGAAGCTAAACGATC 12030 Query 112595 TAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCT 112654 || | ||||| |||||||| || | || | ||||| | || |||| || || | Sbjct 12029 AAACTTTAGACATCGTCCAATCGGAATTGGAATTCAAGGATTAGCTGATGCCTTTATA-T 11971 Query 112655 TTGTCGCCACGC-ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGA 112713 | | | || || || || || ||||| || | | ||| | |||||||||| Sbjct 11970 TGATGAGAATGCCATACGAGTCTGATGAAGCTAAATTATTAAATCAACAAATATTTGAGA 11911 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 |||| ||| | | ||| | ||| |||| | || ||||| || ||| | |||| Sbjct 11910 CAATTTATTATGGAGCTTTAGAGTCGAGCTGTGAATTGGCTGAAAAACTTGGAACTTATG 11851 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTG 112833 | || | ||| || | ||||| ||| |||| | | |||| ||||||||||||| | Sbjct 11850 AGACGTATGAAGGATGTCCAGTATCAAAAGGTATATTACAATATGATATGTGGGAAAA-G 11792 Query 112834 AGACCAAGCTTCACTAC---GACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTC 112890 | ||||| | ||| || ||||| || | || ||| |||||| | |||| Sbjct 11791 ACACCAAC--TGACTTGTGGGATTGGGAAGCATTAAAAGAAAAAATCAAGAATTTTGGTC 11734 Query 112891 TTCGTAA--CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 112948 ||||||| || | || | | |||||||||||||| || || || || || || || || Sbjct 11733 TTCGTAATTCATTGTTATTA--GCACCAATGCCAACTGCATCAACAGCTCAGATTTTAGG 11676 Query 112949 TAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGG 113008 ||||||||| | |||||||| ||||| | || | ||| | | || || Sbjct 11675 TAATAATGAGAGTTTTGAACCGTACACAAGTAATGTTTATAATCGTCGTGTGCTTAGTGG 11616 Query 113009 AGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTC 113068 ||||||| |||| || | ||||| | | || | | ||| |||| | ||| Sbjct 11615 AGAGTTTCAAGTTGTTAATCATCATCTTATTAAGGATTTGACAGAACGTGGTTTATGGGA 11556 Query 113069 CAAGGATATGAAGGATCTCATGGT--GAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 113126 | || |||||| ||| || | |||| ||| || || ||| ||||| || Sbjct 11555 TGATGACATGAAGAATCAAATTATTGGAAA--TAATGGCTCAATACAAGCTATTGATGAA 11498 Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTC 113186 ||||| ||||| ||||| || | || ||||| |||||||| | ||| Sbjct 11497 ATTCCTGATGATATTAAAAACATTTATAAAACAGTATGGGAAATATCTGTCAAGACACAA 11438 Query 113187 ATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAA 113231 ||| | ||||| || |||||||| || || |||||||||||| Sbjct 11437 ATTCAAATGGCAGCTGATCGTGGAGCTTTTATCGATCAAAGTCAA 11393 >seq29385 Length=2825 Score = 107 bits (118), Expect = 2e-18 Identities = 248/370 (67%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| ||||| || | ||| || || | ||| | | ||| | ||||| ||||| Sbjct 1127 ACGATCAAATCGACCAGGTCTAAGTAGTGCTTTATCTAAAACATCTGCACGATTAGTTGC 1068 Query 15944 GGCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTG 16000 || || | | | ||| || ||| ||||| |||||||| || || ||||| Sbjct 1067 AGCAATTATTATCACGCCT---TCATTAGATTCAAAGCCATCCATTTCAACTAATAGCTG 1011 Query 16001 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGG-CATACCACCAGCACTGCGTTGCTTTC 16059 || | ||||| || | |||||||| | | || |||| | || ||| | | Sbjct 1010 ATTTAATGTTTGCTCTCTCTCATCATTACCACCACCTAA-ACCAATTCCACGATGCCTAC 952 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 16119 | || ||||| || ||||| || || | ||||| || ||||| | | |||| Sbjct 951 CTACAGCATCTATTTCATCTATAAAAATTATGCAAGGAGCATTTTTCTTACCTTGATCAA 892 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 | | ||| |||||||| | || ||||| ||||||||||| || ||||| | | | | | Sbjct 891 ACATATCACGTACACGACTTGCACCCACCCCAACAAACATTTCAACAAAATCGGAGCCAG 832 Query 16180 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 16239 || | || |||||||||| ||||| ||||| || || || ||||| || |||| Sbjct 831 AAATACTAAAAAATGGGACATTAGCCTCACCAGCAATTGCACGAGCAAGAAGGGTTTTAC 772 Query 16240 CCGTACCTGG 16249 | ||||| || Sbjct 771 CAGTACCAGG 762 >seq21622 Length=7187 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/417 (65%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 15837 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 15896 || || | ||| || ||||||| | ||| | | | || || | ||||| ||||| Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGACTTGCCGATCGAAGCGC 3491 Query 15897 CCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACA 15956 |||||||| || | ||| |||||| | ||| || || || || || || |||| | Sbjct 3490 CCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAATA 3431 Query 15957 ATAC--CTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTT 16014 || | | | | || |||| |||||||| || ||| | |||||| | || || | Sbjct 3430 ATGCTCCCAGTGCCTT--CAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTGCT 3373 Query 16015 CCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 16074 | |||||||||| | | |||||||| ||||| || || |||||||||| Sbjct 3372 CACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAATCT 3313 Query 16075 CATCAATGAAGACGATGCATGGT--TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTAC 16132 |||| || || | ||||| ||| | |||| ||| ||||| | |||||| || Sbjct 3312 CATCGATAAAAATAATGCAGGGTGCCGCTTTT--TTAGCCTGATCAAACATATCCCGCAC 3255 Query 16133 ACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 16192 || ||| || || || |||||||| || ||||| | | | ||||| | || Sbjct 3254 CCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCGGAAATGCTAAAAAA 3195 Query 16193 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || | ||||| || || ||| || || || |||||||| || || || Sbjct 3194 AGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTACCGGTGCCGGG 3138 >seq10252 Length=19166 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 176891 GCATCACGAACATTCTTACA-CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACC 176949 |||||||| ||||| | || ||| |||||||| || ||||| || || |||| || || Sbjct 13530 GCATCACGGACATT-TAGCAGCTTACCACGAAGTGGAAAGACTCCATAAAGATCACGTCC 13472 Query 176950 AACCACAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAG 177009 ||| ||| | || || || | ||||| || ||||| ||||| |||| ||||| Sbjct 13471 AACAACACCCAATCCACTGACAGCTAATGTTTTAGCCGAATCTCCCTCAGTCAAAATGAG 13412 Query 177010 TGTACACTTGCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACC 177069 |||||| || | || | | || || || | ||| ||||| || | ||| ||||| || Sbjct 13411 TGTACAATTAACCGAGTTTTTAGTTCCAGCATCGTTTGCATCTTCTAGTTTTGGAATTCC 13352 Query 177070 AGTAATTTTGGACTT 177084 | | ||||||||| Sbjct 13351 TCTCAATTTGGACTT 13337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620512127847440