Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq5596 145 9e-30
seq10252 86.0 7e-12
seq21622 84.2 3e-11
>seq5596
Length=16775
Score = 145 bits (160), Expect = 9e-30
Identities = 451/683 (66%), Gaps = 24/683 (4%)
Strand=Plus/Plus
Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006
||||| |||||||| | ||||||||||| || || || || || || || |||||||||
Sbjct 11649 GTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATT 11708
Query 106007 GGTGCCATCAAAAGACTG--TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064
||||| | | || | || ||||||||||| | |||||| ||| || | | |
Sbjct 11709 GGTGC--TAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTT 11766
Query 106065 CCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122
|||| | | | | || ||||| || ||||||||||||| |||| | | ||||
Sbjct 11767 CCCAATCCCACAAGTCAG-TTGGTGTC-TTTTCCCACATATCATATTGTAATATACCTTT 11824
Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182
|| ||| | || ||| | |||||||| | || | ||||||||||||||||||
Sbjct 11825 TGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCT 11884
Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242
|| ||| | | | | | ||| || || ||||| || | ||| | || |||||
Sbjct 11885 CGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTC 11944
Query 106243 ATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301
||| || || ||| | | || ||| ||||| |||| || | ||||||| || |
Sbjct 11945 ATCAGACTCGTATG-GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAA 12003
Query 106302 AACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTC-TCAACGGGATAAAAAT 106358
|| || || | |||| | || || ||| || || ||||| ||||| ||||
Sbjct 12004 TTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGC---TTCTTCAACTGGATAGAAAT 12060
Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418
| ||||| | | |||| |||| | || || |||||||||| ||| | | ||| |
Sbjct 12061 TAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTAT 12120
Query 106419 CATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 106475
||||| | | ||| | | |||||| || | | ||| |||||||| |
Sbjct 12121 GGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAATTGATGCTA 12177
Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535
|||| || ||||| ||||| ||| || || | | |||||| ||||| || || |
Sbjct 12178 AATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTG 12237
Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACGCATCCTTGTAG 106594
| | || || || | ||||| ||| || | ||| | || || |||||||| ||
Sbjct 12238 AGCAACGGATTGTTCCAAGATTCTGTTGATT-CGATTTACGATTACATGCATCCTTATAC 12296
Query 106595 AGCATGTAGGGCGTCCCCGTCTC 106617
||||| || || || || |||||
Sbjct 12297 AGCATATAAGGTGTTCCTGTCTC 12319
>seq10252
Length=19166
Score = 86.0 bits (94), Expect = 7e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 169337 TGAAGCGTCGCGGACATTCTTACA-CTTCCCACGGAGAGGAAAGACGCCATAGTGATCAC 169395
|| ||| || |||||||| | || ||| ||||| || |||||||| ||||| ||||||
Sbjct 13534 TGTAGCATCACGGACATT-TAGCAGCTTACCACGAAGTGGAAAGACTCCATAAAGATCAC 13476
Query 169396 GTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAA 169455
||||||| || | || ||| || | ||||| || ||||| ||||| || | ||
Sbjct 13475 GTCCAACAACACCCAATCCACTGACAGCTAATGTTTTAGCCGAATCTCCCTCAGTCAAAA 13416
Query 169456 TGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAA 169515
|||| ||||| || | || | || || || | |||||| || || | || ||||
Sbjct 13415 TGAGTGTACAATTAACCGAGTTTTTAGTTCCAGCATCGTTTGCATCTTCTAGTTTTGGAA 13356
Query 169516 TACCAGTAATTTTGGACTT 169534
| || | | |||||||||
Sbjct 13355 TTCCTCTCAATTTGGACTT 13337
>seq21622
Length=7187
Score = 84.2 bits (92), Expect = 3e-11
Identities = 271/417 (65%), Gaps = 8/417 (2%)
Strand=Plus/Minus
Query 9144 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 9203
|| || | ||| || ||||||| | ||| | | | || || | ||||| |||||
Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGACTTGCCGATCGAAGCGC 3491
Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263
||||| || || | ||| |||||| | ||| || || || || || || |||| |
Sbjct 3490 CCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAATA 3431
Query 9264 ATAC--CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTT 9321
|| | | | | || |||| |||||||| || ||| | ||||| | || || |
Sbjct 3430 ATGCTCCCAGTGCCTT--CAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTGCT 3373
Query 9322 CCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9381
| |||||||||| | | |||||||| ||||| || || ||||||||||
Sbjct 3372 CACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAATCT 3313
Query 9382 CATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAAC 9439
|||| || || | ||| || ||| | |||| | || ||||| | ||| || ||
Sbjct 3312 CATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCAAACATATCCCGCAC 3255
Query 9440 CCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 9499
|| | ||| || || || |||||||| || ||||| | | | ||||| | ||
Sbjct 3254 CCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCGGAAATGCTAAAAAA 3195
Query 9500 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|| || || | ||||| || || ||| || || || |||||||| || || ||
Sbjct 3194 AGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTACCGGTGCCGGG 3138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589761939247480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |