Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5596 145 9e-30 seq10252 86.0 7e-12 seq21622 84.2 3e-11 >seq5596 Length=16775 Score = 145 bits (160), Expect = 9e-30 Identities = 451/683 (66%), Gaps = 24/683 (4%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| |||||||| | ||||||||||| || || || || || || || ||||||||| Sbjct 11649 GTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATT 11708 Query 106007 GGTGCCATCAAAAGACTG--TTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACAT 106064 ||||| | | || | || ||||||||||| | |||||| ||| || | | | Sbjct 11709 GGTGC--TAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTT 11766 Query 106065 CCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTG 106122 |||| | | | | || ||||| || ||||||||||||| |||| | | |||| Sbjct 11767 CCCAATCCCACAAGTCAG-TTGGTGTC-TTTTCCCACATATCATATTGTAATATACCTTT 11824 Query 106123 GGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCT 106182 || ||| | || ||| | |||||||| | || | |||||||||||||||||| Sbjct 11825 TGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCT 11884 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 || ||| | | | | | ||| || || ||||| || | ||| | || ||||| Sbjct 11885 CGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGCTTC 11944 Query 106243 ATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCGCGAGACCTTGAACACCCA 106301 ||| || || ||| | | || ||| ||||| |||| || | ||||||| || | Sbjct 11945 ATCAGACTCGTATG-GCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAA 12003 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGA--CTTTCGCGCAGTC-TCAACGGGATAAAAAT 106358 || || || | |||| | || || ||| || || ||||| ||||| |||| Sbjct 12004 TTCCGATTGGACGATGTCTAAAGTTTGATCGTTTAGC---TTCTTCAACTGGATAGAAAT 12060 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | ||||| | | |||| |||| | || || |||||||||| ||| | | ||| | Sbjct 12061 TAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTGACTTCCTTCAATTTAT 12120 Query 106419 CATAATCAAA---AGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCA 106475 ||||| | | ||| | | |||||| || | | ||| |||||||| | Sbjct 12121 GGAAATCATATTCTTTACGA---TTTGGCTTGACAAACATATTTAAGGCAATTGATGCTA 12177 Query 106476 AATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGG 106535 |||| || ||||| ||||| ||| || || | | |||||| ||||| || || | Sbjct 12178 AATTACAGACAGCAACTTCATCTTTACTTGAATATTGGACAATTTCAGTACATAAATTTG 12237 Query 106536 AACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG-TTGCACGCATCCTTGTAG 106594 | | || || || | ||||| ||| || | ||| | || || |||||||| || Sbjct 12238 AGCAACGGATTGTTCCAAGATTCTGTTGATT-CGATTTACGATTACATGCATCCTTATAC 12296 Query 106595 AGCATGTAGGGCGTCCCCGTCTC 106617 ||||| || || || || ||||| Sbjct 12297 AGCATATAAGGTGTTCCTGTCTC 12319 >seq10252 Length=19166 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 169337 TGAAGCGTCGCGGACATTCTTACA-CTTCCCACGGAGAGGAAAGACGCCATAGTGATCAC 169395 || ||| || |||||||| | || ||| ||||| || |||||||| ||||| |||||| Sbjct 13534 TGTAGCATCACGGACATT-TAGCAGCTTACCACGAAGTGGAAAGACTCCATAAAGATCAC 13476 Query 169396 GTCCAACGACGGAGAGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAA 169455 ||||||| || | || ||| || | ||||| || ||||| ||||| || | || Sbjct 13475 GTCCAACAACACCCAATCCACTGACAGCTAATGTTTTAGCCGAATCTCCCTCAGTCAAAA 13416 Query 169456 TGAGGGTACACTTTCCAGATTGCGCCGTACCCGCCTTGTTTGCGTCGTCCAACTTGGGAA 169515 |||| ||||| || | || | || || || | |||||| || || | || |||| Sbjct 13415 TGAGTGTACAATTAACCGAGTTTTTAGTTCCAGCATCGTTTGCATCTTCTAGTTTTGGAA 13356 Query 169516 TACCAGTAATTTTGGACTT 169534 | || | | ||||||||| Sbjct 13355 TTCCTCTCAATTTGGACTT 13337 >seq21622 Length=7187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 271/417 (65%), Gaps = 8/417 (2%) Strand=Plus/Minus Query 9144 AAGATCTTCTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGA 9203 || || | ||| || ||||||| | ||| | | | || || | ||||| ||||| Sbjct 3550 AAAATTTGCTCACGACCCCGAATATCTGGTAAACCCACAACGACTTGCCGATCGAAGCGC 3491 Query 9204 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9263 ||||| || || | ||| |||||| | ||| || || || || || || |||| | Sbjct 3490 CCTGGGCGCAGCAAAGCGGGATCAAGTACATCTGGACGGTTGGTGGCAGCAATCACAATA 3431 Query 9264 ATAC--CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTT 9321 || | | | | || |||| |||||||| || ||| | ||||| | || || | Sbjct 3430 ATGCTCCCAGTGCCTT--CAAACCCATCCATTTCCACCAACATCTGGTTCAATGTCTGCT 3373 Query 9322 CCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCT 9381 | |||||||||| | | |||||||| ||||| || || |||||||||| Sbjct 3372 CACGTTCATCATGACCACCCCCTAAACCAGCACCTCGTTGACGCCCAACCGCATCAATCT 3313 Query 9382 CATCAATGAAGACAATACATGGT--TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAAC 9439 |||| || || | ||| || ||| | |||| | || ||||| | ||| || || Sbjct 3312 CATCGATAAAAATAATGCAGGGTGCCGCTTTTTTAGCCTGA--TCAAACATATCCCGCAC 3255 Query 9440 CCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAA 9499 || | ||| || || || |||||||| || ||||| | | | ||||| | || Sbjct 3254 CCGTGAGGCACCAACGCCGACAAACATTTCAACAAAATCAGAGCCGGAAATGCTAAAAAA 3195 Query 9500 GGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || || | ||||| || || ||| || || || |||||||| || || || Sbjct 3194 AGGCACCTTGGCCTCACCAGCTATCGCTTTAGCCAGTAGGGTCTTACCGGTGCCGGG 3138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589761939247480