Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq7918 105 7e-18 >seq7918 Length=32631 Score = 105 bits (116), Expect = 7e-18 Identities = 271/413 (66%), Gaps = 0/413 (0%) Strand=Plus/Plus Query 141350 CAGGTTATTCAACTGAACACCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTT 141409 ||| || |||| ||| || ||||| |||| ||| | | || ||||| ||||||||| Sbjct 18035 CAGTTTGTTCAGCTGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCG 18094 Query 141410 GTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGT 141469 ||||| || | || | | ||| ||||| |||||||| ||||| | || Sbjct 18095 ATTGTTTTTTAACACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGT 18154 Query 141470 AGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTT 141529 ||| || || || || | || ||||| || || ||||| || || |||||||||||||| Sbjct 18155 AGCGGCTCCCCCGCGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTT 18214 Query 141530 CCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCGATTTTCGAACCTTCAGC 141589 | || |||||| || ||||| | | ||||| | || ||| || Sbjct 18215 GTAAAAAGGAATACAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGC 18274 Query 141590 ACGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTGATATATTCGATGATTGA 141649 || ||| |||| | || || || ||||| || || | | || |||| | || | Sbjct 18275 GCGGATCTTGCCGGCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGC 18334 Query 141650 ATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAACT 141709 | ||||||| |||||| || | | || ||| ||||| | |||||| || || Sbjct 18335 ACTGGCGGTGGCATTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCT 18394 Query 141710 GAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAA 141762 || || ||||| || || | | |||||||| || || || |||| ||||| Sbjct 18395 AAATTGACGGGTTGGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAA 18447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541383092645400