Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq16546 98.7 1e-15 >seq16546 Length=4751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 402/621 (65%), Gaps = 17/621 (3%) Strand=Plus/Minus Query 159118 ATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGAACTGATGCCTGTG 159177 ||| ||||||| ||| |||||| ||||| || || || || | || |||| || Sbjct 2309 ATGATTCCACTCGGTTCTTGTACAATGAAGCTTAATTCAACAACTGAGATGATTCCATGC 2250 Query 159178 TCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTAT-GATACAGACCATGGGTTA 159236 |||| | ||| || || | |||||| |||| | ||| ||| | | || || Sbjct 2249 TCATTCCGTCACTTTACTGACATTCATCCATTCGCACCAGTTGAT-CAGGCGAAAGGATA 2191 Query 159237 TCAAAAAAT-TATAGATGACTTACAGAAATGGT-TATGTGATATCACAGGGTTTGATTCT 159294 ||| |||| | || | |||| | |||| | ||||| ||||| || | |||| Sbjct 2190 TCATCAAATGTTTACAGAACTTTCC--AATGACCTGTGTGAGATCACTGGATATGATAAA 2133 Query 159295 ATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAA 159354 || ||| | || || || || |||| ||||| ||||| || || || || | Sbjct 2132 ATCTCACTTCAGCCAAATAGTGGTGCACAAGGTGAATATGCTGGTCTTCGTGCTATTCGT 2073 Query 159355 GCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCA 159414 | || ||| ||| ||| || || | || | || || ||||| |||| ||||| Sbjct 2072 GGTTATCATGAAGCTAATGGACATCATCACAGGACAGTCTGCTTGATTCCAGTCTCAGCT 2013 Query 159415 CATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAA-GTG 159473 |||||||||||||| || || |||||||| |||| ||| | | |||| || Sbjct 2012 CATGGAACTAATCCAGCTAGTGCTCAAATGGCAGGCATGAGAGTGGAACCCATCAAAGTT 1953 Query 159474 TGATGAT--GATGGCAACATAGACATCAAAGATCTAGAGAAGAAAGCAATCATGAATACA 159531 || | ||||| | || ||| | || || || | || | | | |||| || Sbjct 1952 AGAGCTTCAGATGGAACTATTGACTTGGTCCATTTAAAGGAAAAGGT--TGAGGAATTCA 1895 Query 159532 TT--TGAACTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAA 159589 |||| ||||||| | ||| | ||||||||||| || |||| | ||||| | Sbjct 1894 GCAATGAATTGTCATGCCTGATGCTGACATATCCATCAACTAATGGCATTTTTGAGG--A 1837 Query 159590 ACATCAGACAGATATGTAAGATTG--TTCATGAGAATGGTGGTCAGGTATATCTTGATGG 159647 ||| | ||| | | |||| ||||| || |||| ||||| || || | ||||| Sbjct 1836 TCATGTTGCTGATGTTTGTGATTTAATTCATAAGCATGGCGGTCAAGTGTACTTGGATGG 1777 Query 159648 TGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATG 159707 ||| ||| | ||||||||||| || || | ||| |||||||||| | ||||| | Sbjct 1776 TGCTAATATGAATGCACAGGTTGGACTGTGTAGACCTGGTGACTATGGATCTGATGTTTC 1717 Query 159708 TCATCTAAACTTACATAAGAC 159728 ||| | || |||||||||| Sbjct 1716 ACATTTGAATCTACATAAGAC 1696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587833055056720