Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq3947 95.1 2e-14 >seq3947 Length=2916 Score = 95.1 bits (104), Expect = 2e-14 Identities = 205/301 (68%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 104993 GGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCTGGAGCTCAATATATCGAC 105052 |||||||| || ||| ||||||||||||||||| | ||| ||| || ||||||| ||| Sbjct 1122 GGTGATTTGGGTCCAGTTTATGGATTTCAATGGCGTCATTTTGGTGCCCAATATA-AGAC 1180 Query 105053 -TGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAGTCAAGTTATAGAAACTAT 105111 || ||| || ||| | ||||| || || ||||||| | ||||| ||| || Sbjct 1181 ATGCGATCATGAATATGACAAACAAGGAATTGATCAATTAAAAGATGTTATTGAACGCAT 1240 Query 105112 AAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAGTTGGAAT-GTGTCACAATTAT 105170 ||| ||| || |||| |||| ||| || | |||||| || ||| Sbjct 1241 TAAATCTAATCCAAATGATCGACGAATTATTTTAAGTGCCTGGAATCCAGTGGATATT-C 1299 Query 105171 CAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATTTTACATTAGAAATAAAATTT 105230 || | ||||| |||||||| ||||||||| ||||||| ||||| | |||| Sbjct 1300 CACAAATGGCACTTCCACCATGTCATTGTCTGGTACAGTTTTATGTCGCAAAT---GGCG 1356 Query 105231 ATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTGTACCATATAATA 105290 | || ||| ||||| || |||||||| || ||| | || | || || || | ||||| Sbjct 1357 AGTTGAGTTGCCAATTATACCAAAGATCAGCTGATATGGGTCTCGGAGTTCCTTTTAATA 1416 Query 105291 T 105291 | Sbjct 1417 T 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158957102920