Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5596 394 1e-104 seq9081 352 3e-92 seq27324 132 5e-26 >seq5596 Length=16775 Score = 394 bits (436), Expect = 1e-104 Identities = 982/1493 (66%), Gaps = 23/1493 (2%) Strand=Plus/Plus Query 46972 CTTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATAC 47031 |||| || |||||||| | ||| | ||| || | |||||||| ||| |||||||| | Sbjct 11248 CTTTATCAACAGTAAATTGAATAGCATTCGCAGCAGCTTTTGTTCTTAAGTAATACATTC 11307 Query 47032 CAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAG 47091 |||| || | || || |||||||||| ||||| ||| || ||||| |||| | | Sbjct 11308 CAGTTTTAAGTCCCAACTTCCATCCATAAAAATGAATAGATGTCAATTTCCCATAATTTG 11367 Query 47092 GTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTG 47151 |||| | | ||||||||| | |||||||| ||||| ||||| || || | |||||||| Sbjct 11368 GTTCCGCTACATGAATATTGAATGATTGACTTTGATCGATAAAAGCTCCACGATCAGCTG 11427 Query 47152 CCATATCTAAAATAACCCTTTGTGG-TATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 |||| | || | ||| | ||| |||||||||||||||||||| | |||||| Sbjct 11428 CCATTTG-AATTTGTGTCTTGACAGATATTTCCCATACTGTTTTATAAATGTTTTTAATA 11486 Query 47211 TCTTCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 || || || | || | || ||| || || || ||| | ||||||| || || Sbjct 11487 TCATCAGGAATTTCATCAATAGCTTGTATTGAGCCATTATTTCCAATAATTTGATTCTTC 11546 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | |||| ||| | ||||| || || || | ||||||| ||||||||| | Sbjct 11547 ATGTCATCATCCCATAAACCACGTTCTGTCAAATCCTTAATAAGATGATGATTAACAACT 11606 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||| |||||| || || | ||| |||| | ||||||||| || ||||| | | Sbjct 11607 TGAAACTCTCCACTAAGCACACGACGATTATAAACATTACTTGTGTACGGTTCAAAACTC 11666 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || ||||| ||||| |||||||| || ||||| | ||| | ||| || | Sbjct 11667 TCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATTGGTGCTAATAACAATGAA 11726 Query 47448 TTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGAT 47507 || | | ||| | || | || | || ||||||||| | || | | Sbjct 11727 TTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCCCAATCCCACAAGTCAGTT 11786 Query 47508 GGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATAT 47567 || | ||| | ||||||||| | || ||||| || ||| | || | ||| Sbjct 11787 GGTGTCTTTTCCCACATATCATATTGTAATATACCTTTTGATACTGGACATCCTTCATAC 11846 Query 47568 GTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATAT 47627 || | ||||| || | || ||| | |||||| || | || || || | |||||| Sbjct 11847 GTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACAGCTCGACTCTAAAGCTCCATAATAA 11906 Query 47628 ATTGTTTCAAATATTTTTATGTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNN 47686 ||||| |||||||||| | || || || || ||||| || || | || Sbjct 11907 ATTGTCTCAAATATTTGT-TGATTTAATAATTTAGCTTCATCAGACTCGTATGGCATTCT 11965 Query 47687 NNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTT 47746 || | ||| || |||||||||| ||||| || ||||| | ||| | Sbjct 11966 CATCAATATAAAGGCATCAGCTAATCCTTGAATTCCAATTCCGATTGGACGATGTCTAAA 12025 Query 47747 ATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANN 47806 || || | ||||||| | |||||| || | || ||||||||||||| | Sbjct 12026 GTTTGATCGTTTAGCTTCTTCAACTGGATAGAAATTAACTTCAATAATTTTATTTAAATT 12085 Query 47807 NNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTT---ATTT-- 47861 | ||| | ||||||| |||||| | | || |||| Sbjct 12086 TCTTGTGACTATCTTTGTGACTTCCTTCAATTTATGGAAATCATATTCTTTACGATTTGG 12145 Query 47862 -ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 | |||||| |||| | || || ||||||| |||||| ||||| || |||| | | | Sbjct 12146 CTTGACAAACATATTTAAGGCAATTGATGCTAAATTACAGACAGCAACTTCATCTTTACT 12205 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 | |||||| | ||||||| ||||| ||| || ||| || || | ||| || || Sbjct 12206 TGAATATTGGACAATTTCAGTACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTG 12265 Query 47981 ATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATC 48038 ||| ||| |||||||| ||||| || |||||| |||||||||| || || | Sbjct 12266 ATTCGATTTACG--ATTACATGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACT 12323 Query 48039 TGAGATTCAATGATAGATTTCCAAACAGTCCT-AGCCTTTA--TAACAGCTCTAGCTTTA 48095 ||||||||||| || | ||| | | || | ||||||| | || | | | | Sbjct 12324 TGAGATTCAATAATTGCAAACCATA-AATCTTGTGCCTTTACTTGACGAATAAATCGTCC 12382 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155 | || ||| ||| | |||||| || |||||||| | ||||| | || | Sbjct 12383 T--TCTGCTTCATATCGAATATATAGATTTTCAAATTCTTTACCATAAGTCTCATAAAGA 12440 Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 || ||||| || ||||||||| || ||||| |||| |||| || | |||| Sbjct 12441 CCTGGACAGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATA 12500 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 || | || || ||||| | ||| ||| | ||| |||| | | |||||| || ||| Sbjct 12501 AACAAGTCAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCA 12560 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 |||| | || | || ||||| || | | ||| ||||||| ||||| ||||| | | Sbjct 12561 GTATTTTTCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACT 12620 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | |||| || ||||||||||| |||||||| | ||| | || ||||| || ||| Sbjct 12621 GCAAATGCACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAA 12680 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATA 48448 ||||| ||||| || || | |||||| || || ||||| || || | ||||| Sbjct 12681 ACTCTCAACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATA 12733 Score = 140 bits (154), Expect = 4e-28 Identities = 314/466 (67%), Gaps = 37/466 (8%) Strand=Plus/Plus Query 48645 TCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATA 48704 || || |||| || ||||| |||||| | | ||| |||||| | ||| ||||| | | Sbjct 12993 TCAGACAACAGATTGTATGTCTCAATAGCTGCATCAATATCCTCTCCATGAATACCAACA 13052 Query 48705 GATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGA 48764 | || | ||| | ||||| ||| || | ||| ||||||| || || || || ||| Sbjct 13053 GCAACTCTCATAAGCATATGTTGTGGACGTTCTGCAATTTTTCCCTTGATCTTTAACAGA 13112 Query 48765 TATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT--GAAAAGTCGTTATCATTAA 48822 || | ||| || |||||||||||||||||||||||| |||| ||| ||||| | Sbjct 13113 TAGCTTCGTTCTAAGGTTTTAAAACCAAAATAGTTGTATCCGAAATCTCG--ATCATAGA 13170 Query 48823 TAATTGATGAATTTATTC----------TTTCCTTATGTTTATATACTACA--TCCATTA 48870 | || | |||||| | || |||| | ||| | ||| | | || | | Sbjct 13171 TTATAGCTGAATTAAGTCGATCGGCATTTTTCATAATGATCTTATGATGGAATTCGCTAA 13230 Query 48871 -CATT------------TTTTGATATA-ATTGATTCC---TTGTAAAGATCTTCTACAAC 48913 |||| ||| ||||| ||| |||| || |||||||| || | || Sbjct 13231 TCATTGGGGATTTAGTCTTTAGATATTCATT--TTCCATATTATAAAGATCATCCATGAC 13288 Query 48914 ATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAA 48973 |||||||| ||| || || ||||| ||||| ||||| || | ||||| |||||||| Sbjct 13289 TTCACTAAACTGTTTCTTAGTCTCTTTGTGAAGGTTAGAAATGGCAATTCTTGCAGCTAA 13348 Query 48974 TATAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATAT 49032 | ||||||||||| |||| ||| || ||| || | | |||| |||||||| ||| Sbjct 13349 AACAGCATAATCTGCATGATCTGTAGT-CATCGTTGCTGCTGTTTCAGCTGCTAAATTAT 13407 Query 49033 CTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTT 49078 | | ||| | || ||||| |||||||| | || | || ||||| Sbjct 13408 CCAGTTCCTGTGTTGTTACTCCTGTATACAACCCATTGATTACTTT 13453 >seq9081 Length=2203 Score = 352 bits (390), Expect = 3e-92 Identities = 578/830 (70%), Gaps = 10/830 (1%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | |||||||||||| |||| || ||||||||| ||||| || ||||| Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||| || |||||||||| ||||||||||| |||||| | || | | ||| Sbjct 95 AAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCC 154 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 ||||| || || ||| ||||| |||| ||| ||| ||| | ||||||||| Sbjct 155 CAATTCGCCTAATAAATGATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAATT 214 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 ||| || | | || || || ||||| || || | |||||| | ||| || ||||| || Sbjct 215 CATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAGC 274 Query 18897 CTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTAT--AGAAGATGTTTAAAC 18954 ||||| ||||| ||||||| |||| || | | | | | ||||||||| || Sbjct 275 CTCTGTGATAATTTCAACAACTCGTTCTT--TTGGTGGCTTCTGAATAAGATGTTTGTAC 332 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 || || |||||||| |||| ||| ||||| |||||||| || | |||||| || ||| Sbjct 333 ATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGAAT 392 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 || ||||| ||||| | ||| | || || | ||| || || | ||||| |||| | Sbjct 393 GTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCACTA 452 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 ||||| || || || || || ||||| |||| | || ||| ||| | | |||| ||| Sbjct 453 AAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCTTA 512 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194 | ||||| || | ||||| || ||||| || ||||| || || | ||||| ||| Sbjct 513 CTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAATA 572 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||| |||| | ||||| | || ||| | ||| | || || | | | Sbjct 573 GCATTGAATAAGAAGTCACGCTGCTTTGCATCACGGATATAAGTTTCAATTAGAATCGAG 632 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 ||||| ||||| || | |||||| ||||| || || ||||| ||||| ||| |||||| Sbjct 633 TACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGCTTCT 692 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 |||| || ||||| || |||| ||| | || || ||||| || || || || Sbjct 693 GTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTCTGAT 752 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAA---ATGTTTTTCATCTGAGGTTAATGTA 19431 || ||||| ||||||||||| ||| ||||| | ||| | ||| ||||| | Sbjct 753 GCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATC---CTTTAATTTT 809 Query 19432 TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 | ||| ||| | |||||||| |||||||| |||||||| |||||||| || Sbjct 810 TCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAA 859 >seq27324 Length=21994 Score = 132 bits (146), Expect = 5e-26 Identities = 525/801 (66%), Gaps = 44/801 (5%) Strand=Plus/Plus Query 136631 GTAATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTT 136690 || ||||| || || |||||| | || ||| |||| || | | ||||||||||| Sbjct 4459 GTCATGACACCGATATCTCCAATGCTTGCTGAAGCATGCAAAGATTTTGATAAAGCATTG 4518 Query 136691 AAAAAGTTTCCAAATGGAATATTTGCAG--AAATAAAATATGACGGAGAACGTGTACAGG 136748 | || | | | ||| | || ||| || |||| |||||||| ||| | || || Sbjct 4519 AGTAAATGCCGTGAAGGATT--TTACAGTGAAGTAAAGTATGACGGCGAAAGGGTCCAAA 4576 Query 136749 TTCACAAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAAC 136808 ||||||| || ||||| ||||| ||| |||||| | || | ||||| || | ||| Sbjct 4577 TTCACAAAAAGGGAAATGACTTTAAATTCTTTAGTCGCAATTTAAAACCAGTTCAAGAAC 4636 Query 136809 ATAAAGTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTA 136868 ||||| | | | | || || ||| | || ||||| || ||||| | | | | Sbjct 4637 ATAAAATCGGAAAGATCAAAGAATATCTTCCAAAAGCTTTCCCAAATGCAAGCGATTTAA 4696 Query 136869 TTTTAGATTCAGAAATAGTACTAGTAGATAAAAATAAT----AAACCATTACCATTTGGC 136924 | ||||||||||||||| | | || |||| || ||| || ||| || ||||| Sbjct 4697 TCTTAGATTCAGAAATAATCATGGTCGATACAA-TAAGCGGAAATTTATTGCCTTTTGGA 4755 Query 136925 AGTTTGGGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTT 136984 | || || | ||||| ||||| ||| | | || | ||| ||| | ||| |||| Sbjct 4756 ACATTAGGAAAGCATAAGAAGAACGAACTTCAGAATGCCTCAGCATGCCTTTTTATATTC 4815 Query 136985 GATTGTTTGTTTTTTGATGGGTTTGATATGACAGATATTCCTCTAAATGATAGACGATCG 137044 ||||| | | ||| |||| |||| | ||| | | || ||| |||||| | Sbjct 4816 GATTGCCTTTATTTCAATGGCGATGATTTAACAAAGAAAACTTTAAGGGATAGAA-AGAA 4874 Query 137045 ATTCTTCAAGAAATAA-TA-GTAGAAATTCCTA-ATAGAATAA---TG--TTATCAGAAC 137096 |||||| |||| || || | || |||| | || || | || || || ||| Sbjct 4875 ATTCTT--AGAATCAAATATGCAG-----CCTATAAAGCATCACATTGAATTGTCCGAA- 4926 Query 137097 TATATGTGGTTAAGGAA-ATTAATCAA-TTATCTAATATACTAGATAATGTATTATCACA 137154 |||| | |||| ||| | ||| | |||| || || | || ||||| | | Sbjct 4927 TATAAATTATTAACGAAGAAGAATGAGCTTATTGAAATGACAAAGGAA-GTATTGA-AGA 4984 Query 137155 AAAGT-TAGAAGGATTAGTTGTAAAAGATATCAATAGTAGTTATCTTCCAGGAAAAAGAA 137213 || | | ||||||||||| | |||| | || | | | |||| || |||||||| Sbjct 4985 AAGGACTTGAAGGATTAGTATTGAAAGGTCTCGAAACAATTTATGAGCCGGGAAAAAGGC 5044 Query 137214 AATGGTTAAAGATAAAAAAGGATTATTTGAATAATGGCGCTTTAGCTGATTCTATAGACT 137273 |||||||||| | |||||||||||||| | | || | |||| || | ||||| Sbjct 5045 GATGGTTAAAGGTCAAAAAGGATTATTTAATGCAAGGATCAATAGCAGACAGTGCAGACT 5104 Query 137274 TAGTAGTATTAGGTGCTTATTATGGTAAAGGATCA-AAGGGTGGTATAATGGCTGTATTT 137332 | || || || ||||||| |||||| || || | | | |||| | | | | | ||| Sbjct 5105 TGGTCGTGTTGGGTGCTTTTTATGG-AACGGGTAAGATGGGTAATCGATTTAGTATCTTT 5163 Query 137333 TTAATGGGATGTTATGATGATAATGATTGTAA---ATGGAAAACTGTTACAAAATGTTCA 137389 |||||||||||||||||||| | | ||||| |||||| || || |||||| ||||| Sbjct 5164 TTAATGGGATGTTATGATGAGA---AATGTAAAGTATGGAAGACAGTCACAAAA-GTTCA 5219 Query 137390 ----GGACATGATGATGAGAC 137406 ||| ||||||| ||| Sbjct 5220 CAGTGGATTAGATGATGCGAC 5240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561900278714280