Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 226 5e-54
>seq7918
Length=32631
Score = 226 bits (250), Expect = 5e-54
Identities = 677/1027 (66%), Gaps = 37/1027 (4%)
Strand=Plus/Plus
Query 207864 TCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTG 207923
|||||||| || ||||| ||||| ||||| || || ||||| || |||||||||||
Sbjct 15014 TCGATCTGCCCGACCAGATAAGAGCTCACTTCCACCTCTTGAGGTGCCACCTGAACGTTA 15073
Query 207924 TCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAG--TTG--GTTTTGAATGG 207979
|| | ||||| ||| ||||| || | ||||| ||| ||| | ||| ||
Sbjct 15074 TCGGAACTGAGCCAGCTGTTGATCCAAGGCAGCGGGTTGGAGCGTTGCCGAGAAGAAGGG 15133
Query 207980 AAGATCCAAACCGATCGCCTGCATACG--GATGTTGGTAATGTACTCAACATACTGGCAG 208037
|| | |||| ||||||||||| ||||| |||||||| || ||||| || ||
Sbjct 15134 GGTGTC-AGGCCGACTGCCTGCATACGCAGATGT--GTAATGTAGTCCACATATTGACAT 15190
Query 208038 AGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCT 208097
| ||||| ||| ||||||||||| || || ||| || |||||| | |||||||||
Sbjct 15191 AAAATCTCGCGGTTGAGACCGATCATGGAGCCCGATTTAAATAGATAGGCTGCCCACTCT 15250
Query 208098 TTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCA 208157
||||| || || | | | ||| ||| | | | || |||||||| |||
Sbjct 15251 TTTTCCTGTGTCGCCGCCGTGATGAAGATGGCTTCAGCTTCCGCCCGACACTCCCGTGCT 15310
Query 208158 ATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTA 208217
| ||| ||||| || |||||||| || | ||| | ||| | ||||| |||
Sbjct 15311 ACCTCCGCCATTTCGCTATCATCTTGTCCCGCAGCCATGATACTGAGTAGATGCTGGGTA 15370
Query 208218 CCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCC 208277
|| || | ||| || ||||| || || || |||| |||||| | ||| || || || |||
Sbjct 15371 CCCACTAAGTGTAGCGCTTCATCCCGGGCAATCAATTTGATCAACTTGGCATTGCCCTCC 15430
Query 208278 ATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAG-C 208336
|| | || ||||| ||||| || || ||||| || || || ||||| || || | |
Sbjct 15431 ATTAATTTGCGTTCAGCAAAGGCAAAGGAGCAGGCAAAACTGACATAGAAGCGGATGGCC 15490
Query 208337 TTCAAGTGAGTTGATA--GATTGCAGAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGA 208394
| |||| | |||| | ||| | || || || || ||| || | | || ||
Sbjct 15491 TCCAAGACA-TTGACACTCATTAAACAG--AGATAGAGCTTTTTTTTCAACTCCCGTAGG 15547
Query 208395 TTAACATT-AACCTTCTCGCCATTGACTACGTGGT--CACCCAGACCCAGGTAATAGTAC 208451
| | || || || | | | ||| |||| ||| | || ||| || |
Sbjct 15548 CTGATGTTCAAGGTTTT----AGTACCTATTTGGTGCGTACCAAATCC---TAACAG--C 15598
Query 208452 TGGTTG--ATCAAGG----CAATCAGTTTGTCGTAGTAATGGGAAACA--GATGCAGCAC 208503
|||| | | ||| | ||||| | || |||||||| | || | | || ||||
Sbjct 15599 TGGTAGCTGTATAGGGCCTCGATCAGCTCATCATAGTAATGCGCAATATCGTTG--GCAC 15656
Query 208504 GTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGA 208563
||||| ||| | | || | | || | ||||| | |||||| || || |
Sbjct 15657 GTTTCAGGATCTCCTGATTGAGCATGATATCCTTAAAGATGACATCAGGATCATTGACAA 15716
Query 208564 TGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCT 208623
| || | ||||||||||||||| ||| ||| |||||||| || ||| |||| || |
Sbjct 15717 TATTGCGAATGATGTGAGTATAGGAACGGGAGTGAATGGTTTCTGAAAAGGCCCAAGTTT 15776
Query 208624 CAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCAC 208683
| ||| ||||| |||||||| | ||| | || | || || || || || | |
Sbjct 15777 CGATCCAGGTTTCAAGCTCTGGCAGTGAGACCAGGGGTAAAAAAGCGACATTAGGGCTGC 15836
Query 208684 GGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCT 208743
| || || || || ||||| || || || ||||| || || || || || | || | |
Sbjct 15837 GCCCTTGAATCGAATCCAGCAGGGTTTGGTATTTTAGATTGCTAATAAAAATATGCTGTT 15896
Query 208744 CGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGAC 208803
| ||| |||| | |||||| || || ||||| |||||||| || ||||| || |
Sbjct 15897 CATGAGGAGGTAGCTGCTGGTAGTCGATGCGATCACGCGAGACATCAACCTCTTCTGGGC 15956
Query 208804 GCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGT 208863
|||| || ||||| || ||||| ||||| | |||||| ||| ||| |||||||| |
Sbjct 15957 GCCAAAAAAAAGAGAGCTGTTTTTCAATTAACCGCTCAAAAATCGGATATTTCTGTTGAT 16016
Query 208864 CGTAACG 208870
| |||||
Sbjct 16017 CATAACG 16023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910756418143640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |