Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq7918 226 5e-54 >seq7918 Length=32631 Score = 226 bits (250), Expect = 5e-54 Identities = 677/1027 (66%), Gaps = 37/1027 (4%) Strand=Plus/Plus Query 207864 TCGATCTGACCTACCAGGTAAGAAGAAACTTCTACTTCCTGAGGAGCAACCTGAACGTTG 207923 |||||||| || ||||| ||||| ||||| || || ||||| || ||||||||||| Sbjct 15014 TCGATCTGCCCGACCAGATAAGAGCTCACTTCCACCTCTTGAGGTGCCACCTGAACGTTA 15073 Query 207924 TCAGTTACCAGCCATGAGTTAATCCATGGAATTGGGTTAGAG--TTG--GTTTTGAATGG 207979 || | ||||| ||| ||||| || | ||||| ||| ||| | ||| || Sbjct 15074 TCGGAACTGAGCCAGCTGTTGATCCAAGGCAGCGGGTTGGAGCGTTGCCGAGAAGAAGGG 15133 Query 207980 AAGATCCAAACCGATCGCCTGCATACG--GATGTTGGTAATGTACTCAACATACTGGCAG 208037 || | |||| ||||||||||| ||||| |||||||| || ||||| || || Sbjct 15134 GGTGTC-AGGCCGACTGCCTGCATACGCAGATGT--GTAATGTAGTCCACATATTGACAT 15190 Query 208038 AGGATCTCTTTGTTCAGACCGATCATTGAACCATCTTTGAACAGATAGTCAGCCCACTCT 208097 | ||||| ||| ||||||||||| || || ||| || |||||| | ||||||||| Sbjct 15191 AAAATCTCGCGGTTGAGACCGATCATGGAGCCCGATTTAAATAGATAGGCTGCCCACTCT 15250 Query 208098 TTTTCTTGCTGAGCGGTAGCAACGAACATGTCGTATGACTCTTGACGACACTCTGCTGCA 208157 ||||| || || | | | ||| ||| | | | || |||||||| ||| Sbjct 15251 TTTTCCTGTGTCGCCGCCGTGATGAAGATGGCTTCAGCTTCCGCCCGACACTCCCGTGCT 15310 Query 208158 ATCTCAGCCATCTCTGGATCATCTTTACCAGAGTTCATCAGGTTGATGATGTGCTGAGTA 208217 | ||| ||||| || |||||||| || | ||| | ||| | ||||| ||| Sbjct 15311 ACCTCCGCCATTTCGCTATCATCTTGTCCCGCAGCCATGATACTGAGTAGATGCTGGGTA 15370 Query 208218 CCAACCATGTGAAGTGCTTCGTCACGTGCGATCATTTTGATGATCTTAGCGTTACCTTCC 208277 || || | ||| || ||||| || || || |||| |||||| | ||| || || || ||| Sbjct 15371 CCCACTAAGTGTAGCGCTTCATCCCGGGCAATCAATTTGATCAACTTGGCATTGCCCTCC 15430 Query 208278 ATCAGCTTACGTTCGGCAAATGCGAATGAGCAAGCGAAGGATACGTAGAAACGAATAG-C 208336 || | || ||||| ||||| || || ||||| || || || ||||| || || | | Sbjct 15431 ATTAATTTGCGTTCAGCAAAGGCAAAGGAGCAGGCAAAACTGACATAGAAGCGGATGGCC 15490 Query 208337 TTCAAGTGAGTTGATA--GATTGCAGAGCCAGGTACAGTGCTTTCTTAATAGCACGAAGA 208394 | |||| | |||| | ||| | || || || || ||| || | | || || Sbjct 15491 TCCAAGACA-TTGACACTCATTAAACAG--AGATAGAGCTTTTTTTTCAACTCCCGTAGG 15547 Query 208395 TTAACATT-AACCTTCTCGCCATTGACTACGTGGT--CACCCAGACCCAGGTAATAGTAC 208451 | | || || || | | | ||| |||| ||| | || ||| || | Sbjct 15548 CTGATGTTCAAGGTTTT----AGTACCTATTTGGTGCGTACCAAATCC---TAACAG--C 15598 Query 208452 TGGTTG--ATCAAGG----CAATCAGTTTGTCGTAGTAATGGGAAACA--GATGCAGCAC 208503 |||| | | ||| | ||||| | || |||||||| | || | | || |||| Sbjct 15599 TGGTAGCTGTATAGGGCCTCGATCAGCTCATCATAGTAATGCGCAATATCGTTG--GCAC 15656 Query 208504 GTTTCTTGATATGTTCGTTATCTACAACGTCATCAAAGACAATGGAAGGATCGTTAACGA 208563 ||||| ||| | | || | | || | ||||| | |||||| || || | Sbjct 15657 GTTTCAGGATCTCCTGATTGAGCATGATATCCTTAAAGATGACATCAGGATCATTGACAA 15716 Query 208564 TGTTCCTGATGATGTGAGTATAGCTACGACTGTGGATGGTTTCAGAGAAGCCCCAGGTCT 208623 | || | ||||||||||||||| ||| ||| |||||||| || ||| |||| || | Sbjct 15717 TATTGCGAATGATGTGAGTATAGGAACGGGAGTGAATGGTTTCTGAAAAGGCCCAAGTTT 15776 Query 208624 CAGCCCATGTTTCCAGCTCTGGGATAGAGCAGATCGGGAGTAATGCAACGTTTGGACCAC 208683 | ||| ||||| |||||||| | ||| | || | || || || || || | | Sbjct 15777 CGATCCAGGTTTCAAGCTCTGGCAGTGAGACCAGGGGTAAAAAAGCGACATTAGGGCTGC 15836 Query 208684 GGCCCTGGATAGAGTCCAGTAGTGTCTGATATTTCAGGTTACTGATGAACAGGTGTTTCT 208743 | || || || || ||||| || || || ||||| || || || || || | || | | Sbjct 15837 GCCCTTGAATCGAATCCAGCAGGGTTTGGTATTTTAGATTGCTAATAAAAATATGCTGTT 15896 Query 208744 CGTGATCTGGTAAAGCCATGTAGTCAATACGGTCACGGGAGACATCTACTTCTTCAGGAC 208803 | ||| |||| | |||||| || || ||||| |||||||| || ||||| || | Sbjct 15897 CATGAGGAGGTAGCTGCTGGTAGTCGATGCGATCACGCGAGACATCAACCTCTTCTGGGC 15956 Query 208804 GCCAGAAGAAAGAAAGTTGTTTCTCAATGAGTTTCTCAAAGATCTCATACTTCTGTTGGT 208863 |||| || ||||| || ||||| ||||| | |||||| ||| ||| |||||||| | Sbjct 15957 GCCAAAAAAAAGAGAGCTGTTTTTCAATTAACCGCTCAAAAATCGGATATTTCTGTTGAT 16016 Query 208864 CGTAACG 208870 | ||||| Sbjct 16017 CATAACG 16023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910756418143640