Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9081 282 5e-71 >seq9081 Length=2203 Score = 282 bits (312), Expect = 5e-71 Identities = 574/840 (68%), Gaps = 18/840 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| ||||| | ||||||||||| ||||| || ||| || || || ||||| || || Sbjct 35 CATGACTCCACTCTTTTGATATTCGCCAACCTTTCGTTCAAAGAAGTTAGTCTTGCCCTC 94 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 ||||| || ||||||||| |||||||| |||||||| | | | | Sbjct 95 AAGTGAAATTAATTCCATAAATGAGAATGGATTTTTGGTATTATAGACCTTGTCAAGTCC 154 Query 36992 TAATTC-CTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||||| | | | || ||| || || ||||| ||||||| | |||||| ||| | | Sbjct 155 CAATTCGCCTAATAAATG-ATCGGCTACGAATTCAATGTATTCAGACATTAAATCACAAT 213 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || || | | |||||||||| ||| || | |||| ||||| || |||||| Sbjct 214 TCATGCCCAACATCTTTACTGGAAGTGCGTCAGTCAAAAATTCCTTTTCAATCTTTACAG 273 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTT--TAA-ATATTTAA 37167 | ||| | | || | ||||| ||||| |||| || | | ||| || ||| Sbjct 274 CCTCTGTGATAATTTCAACAACTCGTTCTT---TTGGTGGCTTCTGAATAAGATGTTTGT 330 Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 ||| ||| |||||||| |||| ||| | ||||| ||||| || | |||||| || | Sbjct 331 ACATTAAGCATGCAAAGTCACGATGAAGTCCTTCGTCTCTCGAAATAAGTTCATTTGAGA 390 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAG 37287 | || || ||||||||||| || | || ||||||||||| ||||||||||| |||| Sbjct 391 ATGTCAAACCTGGCATTAATCCACGCTTCTTAATCCAAAAGATTGCTGCAAAGCTTCCAC 450 Query 37288 AAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTAT 37347 ||||||||| || || || || ||||| || | || ||| ||| || ||| | | Sbjct 451 TAAAGAAAATCCCCTCGACAGCAGCAAAGGCAATAACTCGTTCACCAAAGTTTGCATGCT 510 Query 37348 AATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAA 37407 | || ||||| ||| | ||| ||||||||| || || || | || |||| Sbjct 511 TACTGGATATCCAATTTAAGGCCCAGTCTGCCTTTTTCTTTACGCACGGTAAAGTCTCAA 570 Query 37408 TTGCTTTTAAGAGAAAGttttttt-CTTCACTATCTGTTATATAAGTATCAATTAGTAAA 37466 | || || || | |||| | ||| | ||| |||||||| |||||||| || Sbjct 571 TAGCATTGAATAAGAAGTCACGCTGCTTTGC-ATCACGGATATAAGTTTCAATTAG-AAT 628 Query 37467 CTA-TACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 | | ||||| || ||||| | |||||| ||||| || || || |||||||| | | ||| Sbjct 629 CGAGTACATCTCTGAGTGTACATTTTCCATAGCAATTTGGAATCCATAAAAGAATCGAGC 688 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 ||| | || |||||| || | | || | | | |||||| ||||| || || || || Sbjct 689 TTCTGTTACTTGAACTTCCTGACTGAATCGTTCAATTAAGTTCTCATTTACAATGCCGTC 748 Query 37586 ACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCATTTGATAA 37642 || |||||||| || | || | | ||||| || | ||| ||| ||| || Sbjct 749 TGATGCAGCAAAGAATGCTAATACGTGTGAGATAAAGTGACGTTCTGAATCCTTT---AA 805 Query 37643 TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGC 37702 ||||| ||| ||| | ||||||||||||||||| ||||| || || ||||| || ||||| Sbjct 806 TTTTTCCCAGTCACTCATATCTTTTGATAAATCGACTTCTTCGACTGTCCAGAAGCTTGC 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592097072679080