Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq29671 91.5 3e-13 >seq29671 Length=17088 Score = 91.5 bits (100), Expect = 3e-13 Identities = 92/117 (79%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 23041 GGTGTGGTATTGGAAAACTCCAGAGTAAGCGAG-CCTTTCCATTCTGGTTCCAGCGGCGT 23099 ||||| ||||| |||||||| ||||||| || | |||| |||| | ||||||| || || Sbjct 9312 GGTGTAGTATTTGAAAACTCTAGAGTAA-CGTGACCTTCCCATCCAGGTTCCAATGGTGT 9370 Query 23100 GACGTTTACGATGATGCCGCAACGCGCATACGTCGATTTGCCGAGGCAGATAACTAA 23156 || ||||| || || || || | ||||| ||||||||||| | ||||||||||| Sbjct 9371 AACATTTACTATAATTCCACATCTTGCATAAGTCGATTTGCCAACACAGATAACTAA 9427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897260626434160