Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_017974.1 Length=149273 Score E Sequences producing significant alignments: (Bits) Value seq7918 82.4 7e-11 >seq7918 Length=32631 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 120264 CCTCACCACCACGAATGGCAGAATCCTGAC-CACGAATCATGCCGAAGTTCAGGCCGATC 120322 ||||||| || ||||||| | ||| | | || ||| ||||| || | || || Sbjct 18244 CCTCACCGCCGCGAATGGG-GCTGCCTAAGGCGCGGATCTTGCCGGCATTAATCCCAATA 18302 Query 120323 CCGGCTCGTTGAGCCGCATATTT-ACCCTGCGCCGTGTTGGCGTTAAAGATCTGGTCGAT 120381 ||||| ||||||| | ||||| || || || || || | | ||| ||| | Sbjct 18303 CCGGCACGTTGAGAGACGTATTTCACAATG-GCACTGGCGGTGGCATTGATGGAGTCTAA 18361 Query 120382 ATTATCACCAGACTCAATCAGTACGCAAGAGCTAAACTGACGGGTCGGGGTACGAACACC 120441 | |||| || |||| || | || ||||||||||| |||||||| |||||||||||||| Sbjct 18362 ACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTTGGGGTACGAACACC 18421 Query 120442 CGCCATGATCGGGGTCGG 120459 |||||| ||||| || || Sbjct 18422 CGCCATAATCGGAGTAGG 18439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477368448490360