Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_017984.1 Length=46387 Score E Sequences producing significant alignments: (Bits) Value seq26615 100 8e-17 >seq26615 Length=46094 Score = 100 bits (110), Expect = 8e-17 Identities = 164/233 (70%), Gaps = 9/233 (4%) Strand=Plus/Plus Query 45459 ACTCTTGCAGAGCGTCAAAAAACCTATGGGTGTTTTGAAGATGTAGCTACGGTTACAGAG 45518 || || |||||||||||| || || ||| |||||| ||||| ||| || || ||| Sbjct 45233 ACCCTAGCAGAGCGTCAATCCACTTACGGGAATTTTGAGGATGTTGCTTTTGTGACTGAG 45292 Query 45519 GAAATTAT-TAAATCATT--AAAAAT---AGGCAATTAC---GACAACATGCCAAAACCC 45569 | ||||| | || || |||| | || ||| | || | ||||||| | Sbjct 45293 AACATTATGTCCATTCTTGCAAAAGTTAGAGTGAATGGCCTTGATGATTTGCCAAATACT 45352 Query 45570 CACAAGATGGCTATGTATATGATTGCTTCAAAAATGGCTCGTCTTGTTAACGGCGATCAC 45629 ||| ||||| | || |||||||| || |||||||| ||| | || ||||| ||| Sbjct 45353 CACCGCATGGCGTTATACATGATTGCATCTAAAATGGCGCGTATCGTGAACGGTGATTTT 45412 Query 45630 AATCATCTTGATAGCTGGCATGACATTGGTGGGTATGCGAAGTTAATTGAAAA 45682 || ||||||||| |||||||||||||| || ||| | ||| |||||||||| Sbjct 45413 AACCATCTTGATTCTTGGCATGACATTGGCGGCTATTCAAAGCTAATTGAAAA 45465 Score = 98.7 bits (108), Expect = 3e-16 Identities = 124/161 (77%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 8485 TGGTATTATTTGATTATTGATCG--AATCTGTGGGCGACACAAGCCA-AT--AAG-ACCA 8538 ||||| |||| |||||||| | ||||||||||||||||| | || ||| || | Sbjct 2855 TGGTAATATTCTCTTATTGATTGTGAATCTGTGGGCGACACAGGTAGTATCGAAGTACAA 2914 Query 8539 GATAGACAG-GTCAG-GTATGCAACTATTCGCACGTTGCCGATTAATAATTTTA---ATT 8593 || | ||| | || | |||||||||||||||||||||| || ||||| | | | | Sbjct 2915 GAGAAGCAGAGCCACTGCATGCAACTATTCGCACGTTGCCAATCAATAAAATAAGCAAGT 2974 Query 8594 A-ATTGTATATAGCTTGGGGCATGCAATCCCGATTGATGTT 8633 | |||| | ||||||||||||||| |||||||||||||||| Sbjct 2975 AGATTGCAGATAGCTTGGGGCATGAAATCCCGATTGATGTT 3015 Score = 98.7 bits (108), Expect = 3e-16 Identities = 285/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Plus Query 34761 TTGCTTCTGTTTTTGCATTAGTAGCAAATCCATTGTTGTCATCATCTGCTGTAGTTGCAA 34820 |||||| || || ||||| ||||| |||||||| ||||| | || || | | Sbjct 33769 TTGCTT--GTCTTAGCATTCACCGCAAAGCCATTGTTACAGTCATCGCCAGTGGTGGTGA 33826 Query 34821 TATTTAGCACACCACAAAGCGTATAACGCTTACCGTAACTAATAGCCGCACCTATGGCTT 34880 | || | | ||| || |||||||| ||||| ||||| | || || ||||| || || | Sbjct 33827 TGTTCAATATACCGCATAGCGTATAGCGCTTGCCGTATGTGATTGCTGCACCGATAGCCT 33886 Query 34881 GAATACCATTCATGCCTTTTGTGGCTGCATCTGTAGGCAAGATAAGATT-GTTTTCGATC 34939 | || ||||||||||| ||| | || || || ||||| ||| | || ||| | Sbjct 33887 GCATCTTGTTCATGCCTTTGGTGACGGCTTCGGTTGGCAATTCAAGCTCAGTGGTCGCTG 33946 Query 34940 ATATGCCCAGCTTTATGACGCAATTGGCAAGTCACCTCAACAAATCCTTTTTCAACTTGC 34999 |||| || |||| || || | ||| | || || | | | | ||| Sbjct 33947 -TATGGCCGTCTTTGTGCATCAGTGTGCAGACAATCTTTACCGACTCAATGCCGTTCTGC 34005 Query 35000 GAATTTTTAAAAGAAACACTAAAGCCATATTTAGACAATATTGGGCGAACAATGTTTACA 35059 | | | || || || |||||||||| | || | || || | || || |||||| Sbjct 34006 TGAGTGCTGAATGACACGCTAAAGCCATGCTCGGATAGAATCGGCTGCACGATTTTTACA 34065 Query 35060 ATATCTTCCAATGGCGTATATGTTGTGCTATATGATTTTTTAGTATGAGCAATTACGGGT 35119 ||||| || ||||| | ||||||||||| || ||| || ||||| ||||| || || Sbjct 34066 ATATCCTCTAATGGTGCGTATGTTGTGCTGTAGCTTTTCTTTGTATGCGCAATCACTGGA 34125 Query 35120 ATTTCTTTGCTCATTTCTGCAAAGTCATTGTTAAAATCAATTACAGCTTGTTGCGCCATA 35179 || | ||| |||| | ||||| | ||||| | || | ||||| ||| ||| Sbjct 34126 ATCTTTTTAGACATTAAAGAGAAGTCGTGATTAAAGTTGATAATCGCTTGCTGCTTCATG 34185 Query 35180 ACTTCTTTTTGCATT 35194 | |||||||||||| Sbjct 34186 ATGTCTTTTTGCATT 34200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148264531027626