Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq7918 190 1e-43 >seq7918 Length=32631 Score = 190 bits (210), Expect = 1e-43 Identities = 273/385 (71%), Gaps = 0/385 (0%) Strand=Plus/Minus Query 71158 CCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAG 71217 || || || ||||||| ||||| ||||| ||||| | |||||||| |||||| Sbjct 18439 CCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCTCTTGTGTGTTA 18380 Query 71218 ATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTAT 71277 || || ||| ||||| |||| || || |||||| | | ||| | ||||| || || Sbjct 18379 ATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCATTGTGAAATAC 18320 Query 71278 GTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCT 71337 || || ||||||| ||||| || || |||| ||||| || || || ||||| || || Sbjct 18319 GTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCTTAGGCAGCCCC 18260 Query 71338 ATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACA 71397 || ||| ||||| || ||||||| || | || || || | || |||||||||||| Sbjct 18259 ATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAACATTTCCAAACA 18200 Query 71398 GCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCT 71457 || |||||||| ||||| || || || | || || || || ||||| ||||| || Sbjct 18199 GCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCCTCTTCTATCCG 18140 Query 71458 ATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGAT 71517 | |||||| ||||| ||| ||| ||||| || ||||| || || ||||| || Sbjct 18139 CTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCGGGGCGTTGAGGAA 18080 Query 71518 AACCGTGTACGTCATTTAGACTATG 71542 || || ||||| ||| | || |||| Sbjct 18079 AATCGGGTACGCCATCTGGATTATG 18055 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 72433 AATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTG 72492 ||||| || || ||||| || || | || ||| | ||||| || ||||| ||||| Sbjct 16712 AATGGCATCGAGCCACCGCGAGGCTATATCAGCGTAAAAGCTTCCAAGGATGGCATCTTA 16653 Query 72493 AAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGAC----TATGAATTGTTGTGGAA 72548 || || || || ||| | || || |||| | || ||||| ||| | ||| | Sbjct 16652 AAACAGGTTGTCCCTGAGTATG----AACGGCTGAAAACACAGTATGAGTTGCTATGGCA 16597 Query 72549 TATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCA 72608 ||||| | || | ||||||| | |||| ||||| | |||||||| ||||||||||| Sbjct 16596 GATTCCTAATAACAGTGGCTATTTGCAATTGGTTGCCGTGATGCAAAAATTTGTCGATCA 16537 Query 72609 GGCAATCTCTGCGAACACAAATTATGACCCTAC 72641 || |||||||| || || | |||||| || || Sbjct 16536 AGCGATCTCTGCCAATACTAGTTATGATCCGAC 16504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 70606 GTAATCGCATGGGCTGCAGAGGGACTTGAAAATGTCTCAGTATCTCAAGTTGAATTGAAA 70665 || ||| | |||||||| || || || | || ||||| || || ||||| || || Sbjct 19282 GTCATCACCTGGGCTGCCGAAGGGCTACAGAACGTCTCCGTCTCACAAGTCGAGCTGCGT 19223 Query 70666 TCTCATATCCAATTTTATGAAGGTATGAAGACAGAAGATATTCACGAAATAATCATTAAA 70725 || ||||||||||||||||| || || || || | ||||| ||||||| || || ||| Sbjct 19222 TCGCATATCCAATTTTATGATGGCATCAAAACCGCGGATATCCACGAAACCATTATCAAA 19163 Query 70726 GCAGCAGCAGAT 70737 ||||| || ||| Sbjct 19162 GCAGCGGCTGAT 19151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335548991897509