Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_018088.1
Length=104936
Score E
Sequences producing significant alignments: (Bits) Value
seq7918 190 1e-43
>seq7918
Length=32631
Score = 190 bits (210), Expect = 1e-43
Identities = 273/385 (71%), Gaps = 0/385 (0%)
Strand=Plus/Minus
Query 71158 CCAACACCTATTATGGGTGGTGTACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAG 71217
|| || || ||||||| ||||| ||||| ||||| | |||||||| ||||||
Sbjct 18439 CCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGCTCTTGTGTGTTA 18380
Query 71218 ATTGACAGTGGCGATAGCCTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTAT 71277
|| || ||| ||||| |||| || || |||||| | | ||| | ||||| || ||
Sbjct 18379 ATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCCATTGTGAAATAC 18320
Query 71278 GTATCCAAACGTGCAGGTATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCT 71337
|| || ||||||| ||||| || || |||| ||||| || || || ||||| || ||
Sbjct 18319 GTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCCTTAGGCAGCCCC 18260
Query 71338 ATACGCAATGGTGAAGCAGTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACA 71397
|| ||| ||||| || ||||||| || | || || || | || ||||||||||||
Sbjct 18259 ATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTACAAACATTTCCAAACA 18200
Query 71398 GCAGTCAAATCTTGCTCTCAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCT 71457
|| |||||||| ||||| || || || | || || || || ||||| ||||| ||
Sbjct 18199 GCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTACCCTCTTCTATCCG 18140
Query 71458 ATGTGGCATTTAGAAGTTGAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGAT 71517
| |||||| ||||| ||| ||| ||||| || ||||| || || ||||| ||
Sbjct 18139 CTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCGGGGCGTTGAGGAA 18080
Query 71518 AACCGTGTACGTCATTTAGACTATG 71542
|| || ||||| ||| | || ||||
Sbjct 18079 AATCGGGTACGCCATCTGGATTATG 18055
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/213 (70%), Gaps = 8/213 (4%)
Strand=Plus/Minus
Query 72433 AATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTG 72492
||||| || || ||||| || || | || ||| | ||||| || ||||| |||||
Sbjct 16712 AATGGCATCGAGCCACCGCGAGGCTATATCAGCGTAAAAGCTTCCAAGGATGGCATCTTA 16653
Query 72493 AAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGAC----TATGAATTGTTGTGGAA 72548
|| || || || ||| | || || |||| | || ||||| ||| | ||| |
Sbjct 16652 AAACAGGTTGTCCCTGAGTATG----AACGGCTGAAAACACAGTATGAGTTGCTATGGCA 16597
Query 72549 TATTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCA 72608
||||| | || | ||||||| | |||| ||||| | |||||||| |||||||||||
Sbjct 16596 GATTCCTAATAACAGTGGCTATTTGCAATTGGTTGCCGTGATGCAAAAATTTGTCGATCA 16537
Query 72609 GGCAATCTCTGCGAACACAAATTATGACCCTAC 72641
|| |||||||| || || | |||||| || ||
Sbjct 16536 AGCGATCTCTGCCAATACTAGTTATGATCCGAC 16504
Score = 86.0 bits (94), Expect = 4e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 70606 GTAATCGCATGGGCTGCAGAGGGACTTGAAAATGTCTCAGTATCTCAAGTTGAATTGAAA 70665
|| ||| | |||||||| || || || | || ||||| || || ||||| || ||
Sbjct 19282 GTCATCACCTGGGCTGCCGAAGGGCTACAGAACGTCTCCGTCTCACAAGTCGAGCTGCGT 19223
Query 70666 TCTCATATCCAATTTTATGAAGGTATGAAGACAGAAGATATTCACGAAATAATCATTAAA 70725
|| ||||||||||||||||| || || || || | ||||| ||||||| || || |||
Sbjct 19222 TCGCATATCCAATTTTATGATGGCATCAAAACCGCGGATATCCACGAAACCATTATCAAA 19163
Query 70726 GCAGCAGCAGAT 70737
||||| || |||
Sbjct 19162 GCAGCGGCTGAT 19151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 335548991897509
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |