Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq8363 145 6e-30
seq5242 86.0 5e-12
>seq8363
Length=52898
Score = 145 bits (160), Expect = 6e-30
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314
|| || ||||| ||||| || || ||||| || |||||||| ||| | || | ||
Sbjct 26341 CGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCA 26400
Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374
|| || ||||| ||||| ||||| ||||| || |||||||| || ||||| |||||||||
Sbjct 26401 TCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTA 26460
Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434
||||||||||| || ||| |||| | ||||| || | || ||||| || || |
Sbjct 26461 TCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATT 26520
Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472
|| || || || || ||||| || || |||||||||||
Sbjct 26521 GTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGT 26558
>seq5242
Length=62730
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 13747 CCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAA 13806
||||||||| || || | ||||| ||||| | |||||| | | | | || || ||
Sbjct 10334 CCACATGCAGCCAACAAACCCGTTTGGATCTCTTCCATCAAGATTAAAACGATCATTTAA 10393
Query 13807 ATATATGGCGTTGATTAAAGCCACTGTA--GGCGAAATAGACCATTCTAATAtttttttA 13864
||| || || || || ||| | | | ||||| | ||||||||| || |||||
Sbjct 10394 ATAAATTGC--TGTTTCAAGACCTTCTTCTGGCGATGCCGTCCATTCTAAAATCTTTTTT 10451
Query 13865 GCCCAATATATTCTCATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCA 13924
|||||||| |||| || | |||||||||||||||||| | || | | || | || |||
Sbjct 10452 GCCCAATACATTCGCAAAAATCCGTGCATTTTGCCTTCCTTTGTCATTTGAATTTGTGCA 10511
Query 13925 GCGTTCCACAATATGTCATGAGTTT 13949
||||| || ||||||||||
Sbjct 10512 CTATTCCATAAATCATCATGAGTTT 10536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396135070684689
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |