Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq8363 145 6e-30 seq5242 86.0 5e-12 >seq8363 Length=52898 Score = 145 bits (160), Expect = 6e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || ||||| ||||| || || ||||| || |||||||| ||| | || | || Sbjct 26341 CGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGTCCA 26400 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || || ||||| ||||| ||||| ||||| || |||||||| || ||||| ||||||||| Sbjct 26401 TCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCTTTA 26460 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 ||||||||||| || ||| |||| | ||||| || | || ||||| || || | Sbjct 26461 TCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTAATT 26520 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || || || || ||||| || || ||||||||||| Sbjct 26521 GTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGT 26558 >seq5242 Length=62730 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 13747 CCACATGCAACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAA 13806 ||||||||| || || | ||||| ||||| | |||||| | | | | || || || Sbjct 10334 CCACATGCAGCCAACAAACCCGTTTGGATCTCTTCCATCAAGATTAAAACGATCATTTAA 10393 Query 13807 ATATATGGCGTTGATTAAAGCCACTGTA--GGCGAAATAGACCATTCTAATAtttttttA 13864 ||| || || || || ||| | | | ||||| | ||||||||| || ||||| Sbjct 10394 ATAAATTGC--TGTTTCAAGACCTTCTTCTGGCGATGCCGTCCATTCTAAAATCTTTTTT 10451 Query 13865 GCCCAATATATTCTCATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCA 13924 |||||||| |||| || | |||||||||||||||||| | || | | || | || ||| Sbjct 10452 GCCCAATACATTCGCAAAAATCCGTGCATTTTGCCTTCCTTTGTCATTTGAATTTGTGCA 10511 Query 13925 GCGTTCCACAATATGTCATGAGTTT 13949 ||||| || |||||||||| Sbjct 10512 CTATTCCATAAATCATCATGAGTTT 10536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396135070684689