Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq7918 118 7e-22 >seq7918 Length=32631 Score = 118 bits (130), Expect = 7e-22 Identities = 236/349 (68%), Gaps = 7/349 (2%) Strand=Plus/Minus Query 70322 TCGGCCAGTCTGTCAACGTAGCACGCTACGATCAGCAAAAGTACCGTGACTTCGAAAAGC 70381 ||||||| | || || ||||| || || ||||| || || || | || || | Sbjct 16046 TCGGCCAACCGGTGAATGTAGCCCGTTATGATCAACAGAAATATCCGATTTTTGAGCGGT 15987 Query 70382 TGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTCGACATTACCACTGACC 70441 | ||||||||||| || || || || |||||||| ||||| || || | | ||| | Sbjct 15986 TAATTGAAAAACAGCTCTCTTTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATC 15927 Query 70442 GCATCGACTTCAATACCA--AGCTGCAAGAGCACGAGCGCCATATTTTCCTGAGCAACCT 70499 |||||||| ||||| |||| | || || | |||||||| | ||||| || Sbjct 15926 GCATCGAC-----TACCAGCAGCTACCTCCTCATGAACAGCATATTTTTATTAGCAATCT 15872 Query 70500 GCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAACGCAACACTGCTGCC 70559 ||||| || ||| ||||||| |||| || ||||| ||||| | | | | || Sbjct 15871 AAAATACCAAACCCTGCTGGATTCGATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACC 15812 Query 70560 GCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTCGTTCTCCGAGACGAT 70619 ||| |||| | || ||||| || || ||| |||| || ||| | || || || || || Sbjct 15811 CCTGGTCTCACTGCCAGAGCTTGAAACCTGGATCGAAACTTGGGCCTTTTCAGAAACCAT 15752 Query 70620 TCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGACCCT 70668 |||| ||| |||||| ||||| || ||| ||| || |||| ||| Sbjct 15751 TCACTCCCGTTCCTATACTCACATCATTCGCAATATTGTCAATGATCCT 15703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330312486566220