Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12008 114 1e-20 seq8363 86.0 5e-12 >seq12008 Length=33819 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 9055 TCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTA 9114 ||| ||| || |||||||||||| ||||||| |||||||||||||| | || || || Sbjct 14668 TCTTCCAAAGTTGGATAAAAGATTCGTTCACAGATTAATTGAGCAATACGATCGCCTTTG 14727 Query 9115 TTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAA 9174 | ||| || || || ||||| |||| || || |||| ||| || || ||| Sbjct 14728 GCAATAGTAAAATCGACATCTGAGTGATTAAACATGACTACACCCAAGTTTCCTCTATAA 14787 Query 9175 TCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGG 9234 || ||||||| || || ||||| ||||| || |||| || || |||| ||| || || Sbjct 14788 TCTTCATCGACAACTCCTGCACCAACGTCAATAAAGTTTTTAACTGCTAATCCTGAACGA 14847 Query 9235 GGCGCGATTCGACCGTAGCATCC 9257 || || ||||| || ||||| || Sbjct 14848 GGTGCAATTCGTCCATAGCACCC 14870 >seq8363 Length=52898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| || || || || |||||| ||||||||||| || | | || Sbjct 26338 AGGCGCAACACTAAGTGAAGTGTTGACTCTTTCTGAATATTGTAGTCGCTCAATGTGCGT 26397 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || || || ||||||||||| |||| ||| |||||||| | |||| || || Sbjct 26398 CCATCCTCTAATTGTTTACCGGCAAAGATCAATCGTTGTTGATCTGGAGGAATTCCTTCT 26457 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || ||| | | | || || | ||| || || | ||| Sbjct 26458 TTATCTTGAATTTTAGCCTTAACATTTTCAATCGTGTCCGATGGCTCGACTTCGAGGGTA 26517 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || |||||||| ||||| || || |||||||| ||| Sbjct 26518 ATTGTCTTACCCGTCAAGGTTTTGACGAAGATCTGCATGGTG 26559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380799819274671