Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq7918 187 3e-42 >seq7918 Length=32631 Score = 187 bits (206), Expect = 3e-42 Identities = 291/415 (70%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 40707 TAAACTGTCATTACCTACGCCTATTATGGCGGGTGTGCGTACTCCTACGCGTCAGTTCTC 40766 |||| | || | ||||| || |||||||||||||| ||||| || || ||||| || Sbjct 18452 TAAAATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAG 18393 Query 40767 CAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGTTCTCTGAACGCTGTTACGTCC-- 40824 | |||||| ||||||| | | ||| | | | || | || || || || Sbjct 18392 CTCTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCC---ACCGCCAG 18336 Query 40825 -GCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCG 40883 || || ||||| || ||||||||||||| |||||||| | || ||||| | || || Sbjct 18335 TGCCATTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCG 18276 Query 40884 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTG 40943 ||| | || || || || ||||| || | ||||| ||| ||| || || | Sbjct 18275 CGCCTTAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGTATTCCTTTTTA 18216 Query 40944 GAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGC 41003 ||||| | || || || || ||||| || ||||| |||||||| || || || || || Sbjct 18215 CAAACATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGC 18156 Query 41004 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAA 41063 ||||| | |||||| | ||||||| ||||| ||| |||||| || | ||||| || Sbjct 18155 TACCCTCTTCTATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAA 18096 Query 41064 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGCTTAAC 41118 || |||||||| ||||| || | || || ||||||||||| |||||||| ||| Sbjct 18095 TCGGGGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAAC 18041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569878118136760