Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq11528 87.8 3e-12 >seq11528 Length=3627 Score = 87.8 bits (96), Expect = 3e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 198934 TGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGA 198993 ||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |||| | Sbjct 59 TGGCCCCTTAGCTCAGT-GGTTAGAGCAGACGACTCATAATCGTTTGGTCCCCCGTTCAA 117 Query 198994 GTCCAGTAGGGGCCACCA 199011 || | ||||||||||| Sbjct 118 ATCGGGGAGGGGCCACCA 135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741174550002760