Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq7918 138 1e-27 seq11528 86.0 7e-12 >seq7918 Length=32631 Score = 138 bits (152), Expect = 1e-27 Identities = 271/401 (68%), Gaps = 0/401 (0%) Strand=Plus/Plus Query 146569 TGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTCTTCAGT 146628 || || |||||||| || ||||| | || ||||| ||||| || |||||| || | Sbjct 18048 TGTACCCCATAATCCAGATGGCGTACCCGATTTTCCTCAACGCCCCGATTGTTTTTTAAC 18107 Query 146629 ACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAATACAAAGTAGCTGCACCGCCA 146688 || | |||| ||||||||| ||||||| | |||||| | | ||||| || || || Sbjct 18108 ACTAACAGGGCTTCTACTTCGCGATGCCATAGCGGATAGAAGAGGGTAGCGGCTCCCCCG 18167 Query 146689 CGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGTTTTCCAGAATGGAATA 146748 || | |||||||| || || ||||| || | | | | | ||| | || |||||| Sbjct 18168 CGCACACCGCCTTGGGAGCACGATTTGACGGCTGTTTGGAAATGTTTGTAAAAAGGAATA 18227 Query 146749 ACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATACATTCCA 146808 ||| |||||| | ||||| ||| ||| ||| || || | | || Sbjct 18228 CAGCCGGTATGAAAGGCCTCACCGCCGCGAATGGGGCTGCCTAAGGCGCGGATCTTGCCG 18287 Query 146809 GCATTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTTTACTGCG 146868 ||||||| |||||||||||||||| || ||||| | || || || || Sbjct 18288 GCATTAATCCCAATACCGGCACGTTGAGAGACGTATTTCACAATGGCACTGGCGGTGGCA 18347 Query 146869 TTAATACTGTCAAGACTATCGCCACCTTCAATAACAACGCAAGAACTGAACTGGCGAGTC 146928 || || ||| | |||||| ||| || || | || ||||| || || || || || Sbjct 18348 TTGATGGAGTCTAAACTATCTGCACACTCGATTAACACACAAGAGCTAAATTGACGGGTT 18407 Query 146929 GGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAAT 146969 || ||||| ||||| |||||||| ||||||||||| ||||| Sbjct 18408 GGGGTACGAACACCCGCCATAATCGGAGTAGGCAGCGAAAT 18448 >seq11528 Length=3627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 74902 TGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAACC 74961 ||||||||| | | ||||||||| | |||||| ||||||||||||| ||||||||||| Sbjct 135 TGGTGGCCCCTCCCCGATTTGAACGGGGGACCAAACGATTATGAGTCGTCTGCTCTAACC 76 Query 74962 ATCTGAGCTAAAGGGCC 74978 | ||||||||| ||||| Sbjct 75 A-CTGAGCTAAGGGGCC 60 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539860457695480