Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq7918 168 7e-37 >seq7918 Length=32631 Score = 168 bits (186), Expect = 7e-37 Identities = 286/412 (69%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 40448 AAACTGTCTCTACCGACTCCAATTATGGCGGGTGTACGTACTCCTACGCGCCAGTTCTCC 40507 ||| | || || || ||||| |||||||||||||| ||||| || || || || || | Sbjct 18451 AAAATTTCGCTGCCTACTCCGATTATGGCGGGTGTTCGTACCCCAACCCGTCAATTTAGC 18392 Query 40508 AGTTGTGTAGTAATTGAATCGGGTGATTCTCTTGGTTCTCTTAACGCTGTAACCTCTGCG 40567 |||||| |||| || | | ||| | | | || | || || || ||| Sbjct 18391 TCTTGTGTGTTAATCGAGTGTGCAGATAGTTTAGACTCCATCAATGCCACCGCCAGTGCC 18332 Query 40568 ATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGGTTAACGCGGGACATATTCGCGCA 40627 || ||||| || | || |||||||| ||||||||| |||| || || | || ||||| Sbjct 18331 ATTGTGAAATACGTCTCTCAACGTGCCGGTATTGGGATTAATGCCGGCAAGATCCGCGCC 18272 Query 40628 ATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATACTGG-TGTGATTCCTTTCTGGAA 40686 | || || || || ||||| || ||||||| || ||| |||||||| | || Sbjct 18271 TTAGGCAGCCCCATTCGCGGCGGTGAGGCCTTTCATACCGGCTGT-ATTCCTTTTTACAA 18213 Query 40687 ACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTGGCGTTCGTGGTGGTGCTGCAAC 40746 |||| | ||||| || || ||||| || || || || || || || || || || || || Sbjct 18212 ACATTTCCAAACAGCCGTCAAATCGTGCTCCCAAGGCGGTGTGCGCGGGGGAGCCGCTAC 18153 Query 40747 ACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACCTTCTGGTGTTGAAGAACAACAA 40806 || | ||||| | ||||||| ||||| ||| ||| | ||||| || ||||| Sbjct 18152 CCTCTTCTATCCGCTATGGCATCGCGAAGTAGAAGCCCTGTTAGTGTTAAAAAACAATCG 18093 Query 40807 AGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATGGTGTACAGCTTAAC 40858 ||||| || ||||| || || || ||||| |||||||| |||||||| ||| Sbjct 18092 GGGCGTTGAGGAAAATCGGGTACGCCATCTGGATTATGGGGTACAGCTGAAC 18041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 42255 AAAAACAGCTTTCTTTCTTCTGGCGTCCGGAAGAAGTCGATCTGTCTACTGACCGTATGC 42314 |||||||||| ||||| || ||||| || ||||| || ||| | || ||| || || Sbjct 15980 AAAAACAGCTCTCTTTTTTTTGGCGCCCAGAAGAGGTTGATGTCTCGCGTGATCGCATCG 15921 Query 42315 AGTATGCAAAACTTCCTGAACATGAAAAAATCATTTTCGATTCTAACCTACAGTATCAAA 42374 | || | || ||| |||||| | ||||| | || ||| | || |||| Sbjct 15920 ACTACCAGCAGCTACCTCCTCATGAACAGCATATTTTTATTAGCAATCTAAAATACCAAA 15861 Query 42375 CCCTGTTAGATACCATTCAGGGACGTGGGCCTAACCTCGCATTTTTGCCAATTGCATC-C 42433 ||||| | ||| | ||||| || || | ||||| |||| ||||| || | | || | Sbjct 15860 CCCTGCTGGATTCGATTCAAGGGCGCAGCCCTAATGTCGCTTTTTTACCCCTGGTCTCAC 15801 Query 42434 GATGTGAGCATGGAAACCTGGATCGAAACGTGGGCGTTTAGTGAAACCATCCACAGCCGT 42493 |||| || |||||||||||||||| ||||| ||| |||||||| ||| |||| Sbjct 15800 TGCCAGAGCTTG-AAACCTGGATCGAAACTTGGGCCTTTTCAGAAACCATTCACTCCCGT 15742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557786605299160