Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq5596 150 9e-32 >seq5596 Length=16775 Score = 150 bits (166), Expect = 9e-32 Identities = 754/1180 (64%), Gaps = 52/1180 (4%) Strand=Plus/Plus Query 25055 GTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATT 25114 ||| | |||||||||| |||||||| ||||| || |||| || ||||| ||||||||| Sbjct 11649 GTGTACGGTTCAAAACTCTCATTATTACCTAAAATCTGAGCTGTTGATGCAGTTGGCATT 11708 Query 25115 AATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCC 25174 ||||| ||| | ||||| | | |||| | || || | || ||||||| ||| Sbjct 11709 GGTGCTAATAACAATGAATTACGAAGACCAAAATTCTTGATTTTTTCTTTTAATGCTTCC 11768 Query 25175 CAATCTAAATTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCA 25234 ||||| | | | | | | | || || || | | |||| ||||||| | || Sbjct 11769 CAATCCCAC-----AAGTCAGTTGGTGTCTTT-TCCCACATATCATATTGTAATATACCT 11822 Query 25235 CTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTTTT 25294 ||| | | || || ||| | || ||| | || | || |||| || Sbjct 11823 TTTGATACTGGACATCCTTCATACGTCTCATAAGTTCCAAGTTTTTCAGCCAATTCACA- 11881 Query 25295 GATTG-CTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAGC 25353 | | | |||||| || ||||||| || | ||||| || || ||||| || ||||| Sbjct 11882 GCTCGACTCTAAAGCTCCATAATAAATTGTCTCAAATATTTGTTGATTTAATAATTTAGC 11941 Query 25354 TTTTTCTCCATCGAAAGCAATTTCCATTAAGGCGAACGTATCTGCTAATCCCTGAACTCC 25413 || || ||| | | ||| ||| || || | ||| |||||||| |||| ||| Sbjct 11942 TTCATCAGACTCGTATGGCATTCTCATCAATATAAAGGCATCAGCTAATCCTTGAATTCC 12001 Query 25414 TAATCCAACTGGACGATGTTTATTATTACTTATC--TCAGTTTCTGATGTTGGATAGAAA 25471 | ||| | |||||||||| || || | ||| | || |||| |||||||||| Sbjct 12002 AATTCCGATTGGACGATGTCTAAAGTT--TGATCGTTTAGCTTCTTCAACTGGATAGAAA 12059 Query 25472 TTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTCA 25531 || || || | |||| || ||| || || | | ||||||| | || || ||| Sbjct 12060 TTAACTTCAATAATTTTATTTAAATTTCTTGTGACTATCTTTGTG-ACTTCCT----TCA 12114 Query 25532 ATAAAGTCAAAATAAGGCTTATCGTTTAT-ATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 || | | |||| | ||| |||| || | || ||||| || ||| || || Sbjct 12115 ATTTA-TGGAAATCA----TATTCTTTACGATTTGGCTTGACAAACATATTTAAGGCAAT 12169 Query 25591 TGATGCTAAATTACAAACAGC---TTGTTCTTTCCCGTCAGAATATTCATTGATCTCGAT 25647 ||||||||||||||| ||||| || ||||| | ||||||| || || | Sbjct 12170 TGATGCTAAATTACAGACAGCAACTTCATCTTTACTT---GAATATTGGACAATTTCAGT 12226 Query 25648 ACATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT--ATTGCATGTATTGACA 25705 |||||| || | |||| |||| ||||| |||||| ||| | | ||| ||| Sbjct 12227 ACATAAATTTGAGCAACGGATTGTTCCAAGATTCTGTTGATTCGATTT-ACG-ATT-ACA 12283 Query 25706 AT-ATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTC 25764 ||| ||||| | ||| || |||||||| |||| ||||||| | | |||| Sbjct 12284 TGCATCCTTATACAGCATATAAGGTGTTCCTGTCTCAACTTGAGATTCAATAATTGCAAA 12343 Query 25765 CCAAAGTTCTCTCGCTTTTACTTTCTTTACGAAGTTACCATCAGAAACAGCTCTTTCGTA 25824 ||| | ||| || ||||||| ||||| | | || | || ||| || Sbjct 12344 CCATAAATCTTGTGCCTTTACTTG----ACGAATAAATCGTC-----CTTCTGCTTCATA 12394 Query 25825 AAGTTCA-ACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAA 25883 | | | | ||| | | || ||| | | |||| | |||| | || Sbjct 12395 TCGAATATATAGATTTTCAAATTCTTTACC-----ATAAGTCT--CATAAAGACCTGGAC 12447 Query 25884 TAATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAAT 25943 ||| ||||| | |||| ||| |||| | ||||| | |||||| || | Sbjct 12448 AGCTATGAGGACACATTAAAGACCACATTTCATTGTTTTCAACACGTTGCATAAACAAGT 12507 Query 25944 CTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCT 26003 | |||||||| | |||||||| | |||||| || | | |||||||||||| ||| | Sbjct 12508 CAGGAATCCATAAAGCATAAAACATATCTCTAGCACGAACTTCTTCTTTTCCAGTATTTT 12567 Query 26004 TTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAAC 26063 | |||| ||||| || ||||||| |||| ||||| ||||| ||||||| ||||| Sbjct 12568 TCTTTAAATCTAGAAACTCAAAAACATCTCCATGCCAAGGTTCCAAATAGACTGCAAATG 12627 Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||| | ||| ||||||||||| || || | ||| || | |||| ||||| ||| Sbjct 12628 CACCAGGACGTTTATTACCACCTTGATCAACATAACGTGCTGTATTATTGTAAACTCTCA 12687 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||| || || | ||| | |||| || ||||| | | || | | ||| | || | Sbjct 12688 ACATAGGTACGAGACCATTCGAAATCCCATTTGTACCAGCTATATATGTCCCTTTTGAAC 12747 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT 26223 |||| ||| ||| || || |||||||| || |||| Sbjct 12748 GAATACAATGAACATTAACGCCAATTCCACCTGCTGATTT 12787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252948478357775