Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28] 29,677 sequences; 154,533,842 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq8700 194 2e-44 seq19326 89.7 7e-13 >seq8700 Length=5779 Score = 194 bits (214), Expect = 2e-44 Identities = 271/380 (71%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846 |||||| ||||| ||||| || || |||| || || || | ||| | ||||||||| || Sbjct 411 TCCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTGCTGTAACATCATCCACATAGCTTC 470 Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906 || || || | ||||| ||||| ||||| || ||||||||| || || | || | Sbjct 471 TACGTAGTCCTTAGCATGACCCCAATCACGTTTTGAATCAAGATTACCAAGTTCCAAGAA 530 Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGT 47966 ||||| | | | || ||| | || ||| || || || || || || ||| | Sbjct 531 TTCTTGTTGATTTAATGAAATTTTAGCGACTGATCTGGTGATTTTTCGTGTCACGAAATT 590 Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026 ||||| | |||||| |||||||||||||| | ||||||| |||| |||||||| ||||| Sbjct 591 CTCACCTCTTCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACCGTA 650 Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086 | |||||| || || | | |||||||| ||||| | ||| ||||| |||| ||| Sbjct 651 GGCTTCACGGTAATTAATAATGATCCAGTAGCCATACAATTTAGCAACTGCATATGGACT 710 Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 | |||||| || ||||| | || || || ||||| || || || ||||| | ||| Sbjct 711 TCTTGGATAAAATGGTGTCTTTTCAGTTTGAGGAGTTTCCACAACTTTTCCATACAATTC 770 Query 48147 ACTGGTGGATGCTTGATAGA 48166 || ||||||||||||| Sbjct 771 TGATGTTGATGCTTGATAGA 790 >seq19326 Length=6529 Score = 89.7 bits (98), Expect = 7e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||| ||| ||||||| ||||| |||| | ||||| |||||||||||| ||| | Sbjct 3547 TGGAGAATAAGGGAGTCGAACCCTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 3606 Query 53800 TGAGCTAATTCCCC 53813 |||||||||||||| Sbjct 3607 TGAGCTAATTCCCC 3620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665247526533640