Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chironomus_20riparius_20[genbank_20GCA_5F001014505.1_202015-05-28]
29,677 sequences; 154,533,842 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq8700 194 2e-44
seq19326 89.7 7e-13
>seq8700
Length=5779
Score = 194 bits (214), Expect = 2e-44
Identities = 271/380 (71%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 47787 TCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTC 47846
|||||| ||||| ||||| || || |||| || || || | ||| | ||||||||| ||
Sbjct 411 TCCTGTAGCAATTACAAAGTCTTCTGGTTTATCCTGCTGTAACATCATCCACATAGCTTC 470
Query 47847 GACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACA 47906
|| || || | ||||| ||||| ||||| || ||||||||| || || | || |
Sbjct 471 TACGTAGTCCTTAGCATGACCCCAATCACGTTTTGAATCAAGATTACCAAGTTCCAAGAA 530
Query 47907 GTCTTGCTTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGT 47966
||||| | | | || ||| | || ||| || || || || || || ||| |
Sbjct 531 TTCTTGTTGATTTAATGAAATTTTAGCGACTGATCTGGTGATTTTTCGTGTCACGAAATT 590
Query 47967 TTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTA 48026
||||| | |||||| |||||||||||||| | ||||||| |||| |||||||| |||||
Sbjct 591 CTCACCTCTTCTTGGCGATTCATGATTAAATAAAATACCATTACATGCATACATACCGTA 650
Query 48027 TGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGA 48086
| |||||| || || | | |||||||| ||||| | ||| ||||| |||| |||
Sbjct 651 GGCTTCACGGTAATTAATAATGATCCAGTAGCCATACAATTTAGCAACTGCATATGGACT 710
Query 48087 ACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146
| |||||| || ||||| | || || || ||||| || || || ||||| | |||
Sbjct 711 TCTTGGATAAAATGGTGTCTTTTCAGTTTGAGGAGTTTCCACAACTTTTCCATACAATTC 770
Query 48147 ACTGGTGGATGCTTGATAGA 48166
|| |||||||||||||
Sbjct 771 TGATGTTGATGCTTGATAGA 790
>seq19326
Length=6529
Score = 89.7 bits (98), Expect = 7e-13
Identities = 65/74 (88%), Gaps = 1/74 (1%)
Strand=Plus/Plus
Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799
|||||||||| ||| ||||||| ||||| |||| | ||||| |||||||||||| ||| |
Sbjct 3547 TGGAGAATAAGGGAGTCGAACCCTTGACCTCCTGCGTGCAAGGCAGGCGCTCTAGCCAGC 3606
Query 53800 TGAGCTAATTCCCC 53813
||||||||||||||
Sbjct 3607 TGAGCTAATTCCCC 3620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665247526533640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |